View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0602-INSERTION-15 (Length: 682)
Name: NF0602-INSERTION-15
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602-INSERTION-15 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 647; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 8 - 682
Target Start/End: Complemental strand, 36149838 - 36149164
Alignment:
| Q |
8 |
caagcacgcaaagacgaagaagaagcacttctcctccaaacatgtgcacttaaaatagatgagaaagaagaagactctcccaagctagaaaaagaagtgc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36149838 |
caagcacgcaaagacgaagaagaagcacttctcctccaaacatgtgcactcaaaatagatgagaaagaagaagactctcccaagctagaaaaagaagtgc |
36149739 |
T |
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| Q |
108 |
aaatgaaggaaagtgattctccgcctccttcgccaccaccaccgccacagctgcaagaagtggaagtgattccacacatcatggaagctcaaattcacaa |
207 |
Q |
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| T |
36149738 |
aaatgaaggaaagtgattctccgcctccttcaccaccaccaccgccacagctgcaagaagtggaagtgattccacacatcatggaagctcaaattcacaa |
36149639 |
T |
|
| Q |
208 |
agaccgagaagaagaacttgtcaattacacatatgcactcaaaatagatgacaaagaagaagaacactctcctaaacaacaagaagaagttcccatgatg |
307 |
Q |
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||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36149638 |
agaccaagaagaagcacttgtcaattacacatgtgcactcaaaatagatgacaaagaagaagaacactctcctaaacaacaagaagaagttcccatgatg |
36149539 |
T |
|
| Q |
308 |
gaaaatgattctccgcctccttcaccgccgccaccactgcatggtgtcgaagtaattccacacaccatggaatctcaagttcacaaagaagaagcactca |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36149538 |
gaaaatgattctccgcctccttcaccgccgccaccactgcatggtgtcgaagtaattccacacacaatggaatctcaagttcacaaagaagaagcactca |
36149439 |
T |
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| Q |
408 |
tcatccaaacatgcgcactgaaaatagacgacaaagaagaacactctcctaatcaaggacaagaagtagcacacgtgaaggaagatgagactgatgcagg |
507 |
Q |
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| T |
36149438 |
tcatccaaacatgcgcactgaaaatagacgacaaagaagaacactctcctaatcaaggacaagaagtagcacacgtgaaggaagatgagactgatgcaga |
36149339 |
T |
|
| Q |
508 |
gacaaaagaaaatgactctccaccaccattgcatgaagttgaagccattcttgaatacgaatttaagaacaaactattactagaagaggctttcactcat |
607 |
Q |
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| T |
36149338 |
gacaaaagaaaatgactctccaccaccattgcatgaagttgaagccattcttgaatacgaatttaagaacaaactattactagaagaggctttcactcat |
36149239 |
T |
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| Q |
608 |
ggtacttatggtgctgagaatggcttatcatatgaacgtttggaatatgtaggtgattcagttcttaacctaatg |
682 |
Q |
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| T |
36149238 |
ggtacttatggtgctgagaatggcttatcatatgaacgtttggaatatgtaggtgattcagttcttaacctaatg |
36149164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 537 - 682
Target Start/End: Complemental strand, 36083412 - 36083267
Alignment:
| Q |
537 |
tgcatgaagttgaagccattcttgaatacgaatttaagaacaaactattactagaagaggctttcactcatggtacttatggtgctgagaatggcttatc |
636 |
Q |
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| T |
36083412 |
tgcatgaagtggaagcaattctagaatacgaatttaagaacatactattgctagaagaggctttcactcactgtacttacggtgctgagaatggcttatc |
36083313 |
T |
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| Q |
637 |
atatgaacgtttggaatatgtaggtgattcagttcttaacctaatg |
682 |
Q |
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| T |
36083312 |
ttatgagcgtttggaatacataggtgattcagttcttaacctaatg |
36083267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 36083572 - 36083419
Alignment:
| Q |
8 |
caagcacgcaaagacgaagaagaagcacttctcctccaaacatgtgcacttaaaatagatgagaaagaagaag---actctcccaagctag---aaaaag |
101 |
Q |
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||||||| |||||| |||||| |||||||||||||||||||||||||||| |||||| |||| |||||||||| ||||||| || | || || ||| |
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| T |
36083572 |
caagcacacaaagaggaagaacaagcacttctcctccaaacatgtgcactcaaaataaatgacaaagaagaagaacactctccgaaacaaggacaagaag |
36083473 |
T |
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| Q |
102 |
aagtgcaaatgaaggaaagtgattctccgcctccttcgccaccaccaccgccac |
155 |
Q |
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| T |
36083472 |
aagtacacatgaaggaaagtgattctctacctcctcctccaccaccaccaccac |
36083419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 236 - 320
Target Start/End: Complemental strand, 36083533 - 36083446
Alignment:
| Q |
236 |
acatatgcactcaaaatagatgacaaagaagaagaacactctcctaaaca---acaagaagaagttcccatgatggaaaatgattctc |
320 |
Q |
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| T |
36083533 |
acatgtgcactcaaaataaatgacaaagaagaagaacactctccgaaacaaggacaagaagaagtacacatgaaggaaagtgattctc |
36083446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 393 - 490
Target Start/End: Complemental strand, 36083556 - 36083456
Alignment:
| Q |
393 |
aagaagaagcactcatcatccaaacatgcgcactgaaaatagacgacaaagaagaa---cactctcctaatcaaggacaagaagtagcacacgtgaagga |
489 |
Q |
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||||| ||||||| || |||||||||| ||||| |||||| | |||||||||||| |||||||| || ||||||||||||| || |||| ||||||| |
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| T |
36083556 |
aagaacaagcacttctcctccaaacatgtgcactcaaaataaatgacaaagaagaagaacactctccgaaacaaggacaagaagaagtacacatgaagga |
36083457 |
T |
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| Q |
490 |
a |
490 |
Q |
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| T |
36083456 |
a |
36083456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 157; Significance: 4e-83; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 236 - 606
Target Start/End: Original strand, 26527381 - 26527763
Alignment:
| Q |
236 |
acatatgcactcaaaatagatgacaaagaagaagaacactctcctaaacaacaagaagaagttcccatgatggaaaatgattctccgcctccttcaccgc |
335 |
Q |
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|||| |||||||||||||||||| | ||||||| |||||||| || | | || ||||||| | ||||| |||| ||||| ||||||||||||||| | |
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| T |
26527381 |
acatgtgcactcaaaatagatgagatagaagaa---cactctcccaagctagaaaaagaagtgcacatgaatgaaagtgattttccgcctccttcaccac |
26527477 |
T |
|
| Q |
336 |
------cgccaccactgcatggtgtcgaagtaattccacacaccatggaatctcaagttcacaaagaagaagcactcatcatccaaacatgcgcactgaa |
429 |
Q |
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|||||| ||| ||| || ||||| ||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26527478 |
taccaccgccactgctgtatgaagtggaagtgattccccacaccatggaagctcatgttcacaaagaagaagcactcatcatccaaacatgcgcactgaa |
26527577 |
T |
|
| Q |
430 |
aatagacgacaaagaagaacactctcctaatcaaggac---------aagaagtagcacacgtgaaggaagatgagactgatgcagggacaaaagaaaat |
520 |
Q |
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| T |
26527578 |
aatagacgacaaagaagaacagtctcctaagcaaggacaagaagaagaagaagaagaacacatgaaggaaaatgagaatgatgcggagacagaagaaaat |
26527677 |
T |
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| Q |
521 |
gactctccaccaccattgcatgaagttgaagccattcttgaatacgaatttaagaacaaactattactagaagaggctttcactca |
606 |
Q |
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| T |
26527678 |
gattctccaccaccaccgcatgaagtggaagccattcttgaatacgaattcaagaacaaactattactagaagaggctttcactca |
26527763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 26527357 - 26527544
Alignment:
| Q |
23 |
gaagaagaagcacttctcctccaaacatgtgcacttaaaatagatgagaaagaagaagactctcccaagctagaaaaagaagtgcaaatgaaggaaagtg |
122 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
26527357 |
gaagaagaagcacttctcctccaaacatgtgcactcaaaatagatgagatagaagaacactctcccaagctagaaaaagaagtgcacatgaatgaaagtg |
26527456 |
T |
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| Q |
123 |
attctccgcctccttcgccaccaccaccgccacagctgcaagaagtggaagtgattccacacatcatggaagctcaaattcacaaaga |
210 |
Q |
| |
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||| |||||||||||| |||| ||||||||||| |||| | ||||||||||||||||| |||| |||||||||||| |||||||||| |
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| T |
26527457 |
attttccgcctccttcaccactaccaccgccactgctgtatgaagtggaagtgattccccacaccatggaagctcatgttcacaaaga |
26527544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 456
Target Start/End: Original strand, 26527358 - 26527421
Alignment:
| Q |
393 |
aagaagaagcactcatcatccaaacatgcgcactgaaaatagacgacaaagaagaacactctcc |
456 |
Q |
| |
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||||||||||||| || |||||||||| ||||| |||||||| || | ||||||||||||||| |
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| T |
26527358 |
aagaagaagcacttctcctccaaacatgtgcactcaaaatagatgagatagaagaacactctcc |
26527421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 26527541 - 26527609
Alignment:
| Q |
24 |
aagaagaagcacttctcctccaaacatgtgcacttaaaatagatgagaaagaagaagactctcccaagc |
92 |
Q |
| |
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||||||||||||| || |||||||||| ||||| |||||||| || ||||||||| | ||||| |||| |
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| T |
26527541 |
aagaagaagcactcatcatccaaacatgcgcactgaaaatagacgacaaagaagaacagtctcctaagc |
26527609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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