View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0602-INSERTION-16 (Length: 814)
Name: NF0602-INSERTION-16
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602-INSERTION-16 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 750; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 750; E-Value: 0
Query Start/End: Original strand, 8 - 814
Target Start/End: Complemental strand, 8557285 - 8556484
Alignment:
| Q |
8 |
ggagccggatagcggctgtaaaagaaacctttgctatcatgcgtccaactaatagaggaaaacttaacctgaatgaaaataaattccaatcaatcttgat |
107 |
Q |
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| T |
8557285 |
ggagccggatagcggctgtaaaagaaacctttgctatcatgcgtccaactaatagaggaaaacttaacctgaatgaaaataaattccaatcaatcttgat |
8557186 |
T |
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| Q |
108 |
tcaccgttcaactcttgagtatcctaattttaagttactaaaagagtatgagatattactgacccaggacaaagtatcaggctcaacaaccttgtcatga |
207 |
Q |
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| T |
8557185 |
tcaccgttcaactcttgagtatcctaattttaagttactaaaagagtatgagatattactgacccaagacaaagtatcaggctcaacaaccttgtcatga |
8557086 |
T |
|
| Q |
208 |
acacgcatgacctttatggtgacccaatcactaccgcttgaactgagcccataagccaaaaacttagcatcttggctaatcgagaagctgttgagtgaaa |
307 |
Q |
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| T |
8557085 |
acacgcatgacctttatggtgacccaatcactaccgcttgaactgagcccataagccaaaaacttagcatcttggctaatcgagaagctgttgagtgaaa |
8556986 |
T |
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| Q |
308 |
cagtaccatcttcactaaggacattgggatcaagcaaaacatcggcttcaccctcgaaactatcctgaaataattaacacaatggtactactactaaatt |
407 |
Q |
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| T |
8556985 |
cagtaccatcttcactaaggacattgggatcaagcaaaacctcggcttcaccctcgaaactatcctgaaataattaacacaatggtactactactaaatt |
8556886 |
T |
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| Q |
408 |
tacctaatttaaattggatacataaatataacttgaatagaagtccagtaagtgcagctcagatgataaaaggttgcagaggttatggctactacacaac |
507 |
Q |
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| T |
8556885 |
tacctaatttaaattggatacataaatataacttgaatagaagtcc----agtgcagctcagatgataaaaggttgcagagtttatggctactaagcaac |
8556790 |
T |
|
| Q |
508 |
ttgaaacaaaagaaacaaaaatagtagatgagaaagtaagttacctgaacataaaggacgctttgaggttgaagaccagtattatggaagtaaaagtagt |
607 |
Q |
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| T |
8556789 |
ttgaaacaaaagaaacaaaaatagtagatgagaaagtaagttacctgaacataaaggacgctttgaggttgaagaccagtattgtggaagtaaaagtagt |
8556690 |
T |
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| Q |
608 |
gattaacacctcttttgaaaggagtgctataacgaggatgatcaaacacctttttgattgtttcaccaagtttgggttctacaatcacatgtcttcagca |
707 |
Q |
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| T |
8556689 |
gattaacacctcttttgaaaggagtggtataacgaggatgatcaaacacctttttgattgtttcaccaagttt-ggttctacaatcacatgtcttcagca |
8556591 |
T |
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| Q |
708 |
ctgaatcagtcaacacaacctgtttctgtacaaagtctttgacttcttcagcatcaggattttcaagccaacggtaagggtcgggaacattaacgccgtg |
807 |
Q |
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| T |
8556590 |
ctgaatcagtcaaaacaacctgtttctgtacaaagtctttgacttcttcagcatcaggattttcaagccaacggtaagggtcgggaacattaacgccgtg |
8556491 |
T |
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| Q |
808 |
atagttg |
814 |
Q |
| |
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| T |
8556490 |
atagttg |
8556484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 552 - 776
Target Start/End: Complemental strand, 8552397 - 8552188
Alignment:
| Q |
552 |
ctgaacataaaggacgctttgaggttgaagaccagtattatggaagtaaaagtagtgattaacacctcttttgaaaggagtgctataacgaggatgatca |
651 |
Q |
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| T |
8552397 |
ctgaacataaaggacactttgaggttgaagaccagtatta--------------gtgattagcacctcttttgaaaggagcggtataacgaggatgatca |
8552312 |
T |
|
| Q |
652 |
aacacctttttgattgtttcaccaagtttgggttctacaatcacatgtcttcagcactgaatcagtcaacacaacctgtttctgtacaaagtctttgact |
751 |
Q |
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|||| ||||||||| |||||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||||| || || || ||||||||| |
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| T |
8552311 |
aacaactttttgatagtttcaccaagttt-ggctctacaatcacatgtcttcaatactgaatctgtcaacacaacctgtttttgcacgaactctttgact |
8552213 |
T |
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| Q |
752 |
tcttcagcatcaggattttcaagcc |
776 |
Q |
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| T |
8552212 |
tcttctgcgtcaggattttcaagcc |
8552188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 53736654 - 53736588
Alignment:
| Q |
14 |
ggatagcggctgtaaaagaaacctttgctatcatgcgtccaactaatagaggaaaacttaacctgaa |
80 |
Q |
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| T |
53736654 |
ggatagcggctataaaagaaacctttgttatcatgtgtccagctaatggaggaaaatttaacctgaa |
53736588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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