View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0602-INSERTION-18 (Length: 724)
Name: NF0602-INSERTION-18
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602-INSERTION-18 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 151 - 724
Target Start/End: Original strand, 33526145 - 33526726
Alignment:
| Q |
151 |
gctaactgggaaattcaacattaaatttccaggtttagaatcttttatgatcattt-ggtttctctgttgtacagctttttggtttattttacataagta |
249 |
Q |
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| T |
33526145 |
gctaactgggaaattcaacattaaattcccaggtttagaatcttttatgatcattttggtttctctgttgtacagctttttggtttattttacataagta |
33526244 |
T |
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| Q |
250 |
ccttggaaagttttttacaggtataaatatgtactatatatgtacttgtatgaatttgtgtactctgttctctagattcataaattactgtatagttaaa |
349 |
Q |
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| T |
33526245 |
ccttggaaagttttttacaggtataaatatgtactatatatgtacttgtatgaatttgtgtactctgttctctagattcataaattactgtatagttaaa |
33526344 |
T |
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| Q |
350 |
ggaatgtgtannnnnnnnncttccaaaatttgcataattgagaattgttttctgagttcttattagaaccgatgcaaaaagattgttcatgtatgtatat |
449 |
Q |
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| T |
33526345 |
ggaatgtgtatttttttttcttccaaaatttgcataattgagaattgttaactgagttcttattagaaccgatgcaaaaagattgttcatgtatgtatat |
33526444 |
T |
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| Q |
450 |
gtgtgtgtaatgctatttttcttgtctttaatttttctacagaagtttattcat-------nnnnnnnnnncaagctaaagaatgtttttggaattcttg |
542 |
Q |
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| T |
33526445 |
gtgtgtgtaatgctatttttcttgtctttaatttttctacagaagtttattcataaaaaaaaaaaaaaaaacaagctaaagaatgtttttggaattcttg |
33526544 |
T |
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| Q |
543 |
tggacacatttctgaaatggtccctgttcctgactggcatgtttggttctagagttcaatgacaagagagtagaatagatttaactcttggttcttttta |
642 |
Q |
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| T |
33526545 |
tggacacatttctgaaatggtccctgttcctgactggcatgtttggttctagagttcaatgacaagagagtagaatagatttaactcttggttcttttta |
33526644 |
T |
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| Q |
643 |
tggtttgatccagggacatactgacatacacacaattttgtttcaacagtgagcacnnnnnnnctctacttgtgttgtacta |
724 |
Q |
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| T |
33526645 |
tggtttgatccagggacatactgacatacacacaattttgtttcaacagtgagcactttttttctctacttgtgttgtacta |
33526726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 33526002 - 33526082
Alignment:
| Q |
8 |
tttaacagatccaatgtcgaggagtcgaagttggaaaagatgaattaatctgatcattttccaatattaattactcttata |
88 |
Q |
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| T |
33526002 |
tttaacagatccaatgtcgaggagtcgaagttggaaaagatgaattaatctgatcattttccaatattaattactcttata |
33526082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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