View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0602-INSERTION-20 (Length: 793)

Name: NF0602-INSERTION-20
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0602-INSERTION-20
NF0602-INSERTION-20
[»] chr3 (6 HSPs)
chr3 (8-422)||(52366259-52366677)
chr3 (621-793)||(45500850-45501022)
chr3 (422-512)||(38337417-38337507)
chr3 (427-510)||(38336967-38337048)
chr3 (429-508)||(44022031-44022110)
chr3 (435-497)||(15450256-15450318)
[»] chr1 (12 HSPs)
chr1 (428-793)||(14924996-14925366)
chr1 (422-573)||(11469099-11469252)
chr1 (422-512)||(11469705-11469795)
chr1 (427-512)||(31787501-31787586)
chr1 (427-512)||(31788216-31788301)
chr1 (422-512)||(14924692-14924782)
chr1 (433-499)||(7464023-7464089)
chr1 (433-499)||(11426882-11426948)
chr1 (433-499)||(11427460-11427526)
chr1 (433-499)||(7463444-7463510)
chr1 (433-499)||(37889908-37889974)
chr1 (433-499)||(37890486-37890552)
[»] scaffold0189 (2 HSPs)
scaffold0189 (423-793)||(12513-12888)
scaffold0189 (422-512)||(12202-12292)
[»] chr4 (12 HSPs)
chr4 (450-793)||(10420963-10421310)
chr4 (422-573)||(6246802-6246955)
chr4 (422-512)||(6247410-6247501)
chr4 (422-512)||(10421521-10421611)
chr4 (422-512)||(15481510-15481600)
chr4 (427-510)||(15481058-15481141)
chr4 (464-510)||(50709719-50709765)
chr4 (438-507)||(53664246-53664315)
chr4 (438-510)||(50710359-50710431)
chr4 (440-499)||(2093865-2093924)
chr4 (458-500)||(13856645-13856687)
chr4 (357-411)||(37306433-37306487)
[»] chr8 (11 HSPs)
chr8 (422-573)||(12350528-12350684)
chr8 (422-512)||(12349985-12350075)
chr8 (427-512)||(43971301-43971386)
chr8 (427-507)||(39257657-39257737)
chr8 (427-512)||(43972026-43972111)
chr8 (422-510)||(43924508-43924596)
chr8 (422-512)||(43924958-43925048)
chr8 (434-510)||(38686333-38686409)
chr8 (458-507)||(38687000-38687049)
chr8 (453-510)||(39258391-39258448)
chr8 (438-507)||(33802318-33802387)
[»] chr5 (3 HSPs)
chr5 (431-511)||(4554684-4554764)
chr5 (422-573)||(4555269-4555419)
chr5 (433-499)||(6805910-6805976)
[»] chr2 (11 HSPs)
chr2 (427-512)||(4993627-4993712)
chr2 (427-512)||(4975719-4975804)
chr2 (427-510)||(4976447-4976530)
chr2 (427-510)||(4994354-4994437)
chr2 (463-510)||(42369702-42369749)
chr2 (434-507)||(8536167-8536240)
chr2 (458-510)||(8536828-8536880)
chr2 (422-510)||(37545694-37545782)
chr2 (422-510)||(41519867-41519955)
chr2 (357-416)||(34142236-34142295)
chr2 (428-502)||(42370900-42370974)
[»] chr6 (2 HSPs)
chr6 (427-512)||(27763436-27763521)
chr6 (373-411)||(10067283-10067321)
[»] chr7 (5 HSPs)
chr7 (429-510)||(46757449-46757530)
chr7 (357-417)||(29310443-29310503)
chr7 (429-512)||(46759202-46759285)
chr7 (357-411)||(41873463-41873517)
chr7 (429-510)||(27599236-27599317)
[»] scaffold0071 (1 HSPs)
scaffold0071 (435-497)||(11873-11935)


Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 8 - 422
Target Start/End: Original strand, 52366259 - 52366677
Alignment:
Q  8 ggcatatgtagccgtttgttctgtcaactaaaattttaatctcaggatagagaaccttataccaaaactgtgaaagtagtttaatatatacatgaacggt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52366259 ggcatatgtagccgtttgttctgtcaactaaaattttaatctcaggatagagaaccttataccaaaactgtgaaagtagtttaatatatacatgaacggt 52366358  T
Q  108 gctccatgtacgaaatcagatttaattaaggagataactttatgaaggaatgacaagatagctatctttaatgcaaacagcttttgatatatatgagctt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52366359 gctccatgtacgaaatcagatttaattaaggagataactttatgaaggaatgacaagatagctatctttaatgcaaacagcttttgatatatatgagctt 52366458  T
Q  208 ttatgaagcaaaaacaaataaaagtaaataattggtttattttttcttctcaatac---tattgcc-aaaatatgagtttgtatattactatactgactt 303  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||   ||||||| ||||||||||||||||||||| |||||||||||    
T  52366459 ttatgaagcaaaaacaaataaaattaaataattggtttattttttcttctcaatactattattgccaaaaatatgagtttgtatattattatactgactt 52366558  T
Q  304 ctaaattgttaagttgtcattactttctcacacattaagaatgaatttcataaaaagtggtgagacctacatgagttttactcaataaaaaagtgaatgt 403  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  52366559 ctaaattgttaagttttcattactttctcacacattaagaatgaatttcatataaagtggtgagacctacatgagttttactcaataaaaaagtgaatgt 52366658  T
Q  404 tagagagattgttcataaa 422  Q
    |||||||||||||||||||    
T  52366659 tagagagattgttcataaa 52366677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 621 - 793
Target Start/End: Complemental strand, 45501022 - 45500850
Alignment:
Q  621 gaacagagtgatggcacatgctggaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcacctgattcacct 720  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45501022 gaacagagtgatggcacatgctggaacttgatttttgagaatttgatcccacatctatgtctccacaacaaacacaaaaacaccatcacctgattcacct 45500923  T
Q  721 ctattgtctcgtttgcagtattataaagtgactaccaagaatggtgaagatccatggcagattgagtggtgaa 793  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  45500922 ctattatctcgtttgcagtattataaagtggctaccaagaatggtgaagatccatggcagattgagtggtgaa 45500850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 422 - 512
Target Start/End: Complemental strand, 38337507 - 38337417
Alignment:
Q  422 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 512  Q
    |||| |||||||||| ||||||||||||| |||||||||| | |||||| || ||||||||||| |||||||||||||||| |||||||||    
T  38337507 aaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacaccaga 38337417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 427 - 510
Target Start/End: Original strand, 38336967 - 38337048
Alignment:
Q  427 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 510  Q
    |||||||||| ||||||||||||| |||||||||| | |||||| || ||||||||||| |||||||  ||||||| |||||||    
T  38336967 gaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatc--agacactcaacacca 38337048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 429 - 508
Target Start/End: Complemental strand, 44022110 - 44022031
Alignment:
Q  429 agttgttttccaccatgggaaaactaattttgatcattaga-taaactagagaacatacttttatcatagacacttaacac 508  Q
    |||||||||||||||||||||||  || ||||| ||||||| |||||||| |||||||||||||||||| ||||| |||||    
T  44022110 agttgttttccaccatgggaaaaaaaaatttgaccattagattaaactag-gaacatacttttatcatacacactcaacac 44022031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 435 - 497
Target Start/End: Original strand, 15450256 - 15450318
Alignment:
Q  435 tttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatag 497  Q
    ||||||||||||||||  |||| |||| |||||||| || ||||||||||| |||||||||||    
T  15450256 tttccaccatgggaaagttaatcttgaccattagattaagtagagaacatatttttatcatag 15450318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 428 - 793
Target Start/End: Complemental strand, 14925366 - 14924996
Alignment:
Q  428 aagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccagannnnnnnnccatatt 527  Q
    ||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||        |||||||    
T  14925366 aagttgtttcccaccatgggaaagctaattttgaccattagataaactagagaacatacttttatcatagacactcaacaccagattttttt-ccatatt 14925268  T
Q  528 ggcccaccacttgcagctgccccaactctctttcctttctctcctttc------tggcgacgcttgcatgcttcaacaattccaggatgaatataagagg 621  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |      ||||||||||||||||||||||||||||||||||||||||||||||    
T  14925267 ggcccaccacttgcagctgccccaactctcttttctttctctccttcccgaatttggcgacgcttgcatgcttcaacaattccaggatgaatataagagg 14925168  T
Q  622 aacagagtgatggcacatgctggaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcacctgattcacctc 721  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14925167 aacagagtgatggcacatgctggaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcacctgattcacctc 14925068  T
Q  722 tattgtctcgtttgcagtattataaagtgactaccaagaatggtgaagatccatggcagattgagtggtgaa 793  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14925067 tattgtctcgtttgcagtattataaagtgactaccaagaatggtgaagatccatggcagattgagtggtgaa 14924996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 422 - 573
Target Start/End: Original strand, 11469099 - 11469252
Alignment:
Q  422 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga--nnnnnnn 519  Q
    |||| |||||||||| ||||||||||||| |||||||||| ||||||||||  |||||||||||||||||||||||||||| |||||||||             
T  11469099 aaagggaagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaacatacttttatcatagacactcaacaccagattttttttt 11469198  T
Q  520 nccatattggcccaccacttgcagctgccccaactctctttcctttctctcctt 573  Q
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  11469199 ttcatattggcccaccacttgcagctgtcccaactctcttttctttctctcctt 11469252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 422 - 512
Target Start/End: Complemental strand, 11469795 - 11469705
Alignment:
Q  422 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 512  Q
    |||| ||||||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| | |||||||||    
T  11469795 aaagggaagttgtttttcaccatggaaaaactaattttgaccattagataaagtagagaacatacttttatcatagacattcaacaccaga 11469705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 427 - 512
Target Start/End: Original strand, 31787501 - 31787586
Alignment:
Q  427 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 512  Q
    |||||||||| ||||||||| ||| |||||||||| ||||||||||| |||||||||||||||||||||||| ||| |||| ||||    
T  31787501 gaagttgtttcccaccatggaaaagctaattttgaccattagataaagtagagaacatacttttatcatagagactcaacatcaga 31787586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 427 - 512
Target Start/End: Complemental strand, 31788301 - 31788216
Alignment:
Q  427 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 512  Q
    |||||||||| |||||||||||||  ||||||| | ||||||||||| ||||||||||||||||| |||||||||| |||||||||    
T  31788301 gaagttgtttcccaccatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacaccaga 31788216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 422 - 512
Target Start/End: Original strand, 14924692 - 14924782
Alignment:
Q  422 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 512  Q
    |||| |||||||||| ||||||||||||| |||||||||| | ||| || || ||||||||||| |||||||||||||||| |||||||||    
T  14924692 aaagggaagttgtttcccaccatgggaaagctaattttgaccgttaaattaaatagagaacatatttttatcatagacactcaacaccaga 14924782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 433 - 499
Target Start/End: Complemental strand, 7464089 - 7464023
Alignment:
Q  433 gttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 499  Q
    |||| |||||||||||||||||||||||| ||| |||| |||||||||||| |  ||||||||||||    
T  7464089 gtttcccaccatgggaaaactaattttgaccatcagattaactagagaacacaactttatcatagac 7464023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 433 - 499
Target Start/End: Original strand, 11426882 - 11426948
Alignment:
Q  433 gttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 499  Q
    |||| ||||||||||||| |||||||||| |||||||| ||||| |||||| | |||||||||||||    
T  11426882 gtttcccaccatgggaaagctaattttgaccattagattaactaaagaacacagttttatcatagac 11426948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 433 - 499
Target Start/End: Complemental strand, 11427526 - 11427460
Alignment:
Q  433 gttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 499  Q
    |||||| |||||||||||||||||||||| ||| |||| |||||||||||| |  ||||||||||||    
T  11427526 gttttctaccatgggaaaactaattttgaccatcagattaactagagaacacaactttatcatagac 11427460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 433 - 499
Target Start/End: Original strand, 7463444 - 7463510
Alignment:
Q  433 gttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 499  Q
    |||| ||||||||||||| |||||||||| |||||||| || || |||||| | |||||||||||||    
T  7463444 gtttcccaccatgggaaagctaattttgaccattagattaaataaagaacacagttttatcatagac 7463510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 433 - 499
Target Start/End: Original strand, 37889908 - 37889974
Alignment:
Q  433 gttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 499  Q
    |||| ||||||||||||| | |||||||| |||||||| ||||| |||||| | |||||||||||||    
T  37889908 gtttcccaccatgggaaagcgaattttgaccattagattaactaaagaacacagttttatcatagac 37889974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 433 - 499
Target Start/End: Complemental strand, 37890552 - 37890486
Alignment:
Q  433 gttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 499  Q
    |||||| |||||||||||||||||||||| ||| |||| ||| |||||||| |  ||||||||||||    
T  37890552 gttttctaccatgggaaaactaattttgaccatcagattaacaagagaacacaactttatcatagac 37890486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 282; Significance: 1e-157; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 423 - 793
Target Start/End: Complemental strand, 12888 - 12513
Alignment:
Q  423 aagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccagannnnnnnncc 522  Q
    |||||||||||||| |||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||          ||    
T  12888 aagtgaagttgtttcccaccatgggaaagttaattttgaccattagataaactagagaacatacttttatcatagacactcaacaccat-ttttttttcc 12790  T
Q  523 atattggcccaccacttgcagctgccccaactctctttcctttctctcctt------tctggcgacgcttgcatgcttcaacaattccaggatgaatata 616  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||      ||||| |||||||||||||||||||||||||||||||||||||    
T  12789 atattggcccaccacttgcagctgccccaactctcttttctttctctccttcccgaatctggtgacgcttgcatgcttcaacaattccaggatgaatata 12690  T
Q  617 agaggaacagagtgatggcacatgctggaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcacctgattc 716  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12689 agaggaacagagtgatggcacatgctggaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcacctgattc 12590  T
Q  717 acctctattgtctcgtttgcagtattataaagtgactaccaagaatggtgaagatccatggcagattgagtggtgaa 793  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12589 acctctattgtctcgcttgcagtattataaagtgactaccaagaatggtgaagatccatggtagattgagtggtgaa 12513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 422 - 512
Target Start/End: Original strand, 12202 - 12292
Alignment:
Q  422 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 512  Q
    |||| |||||||||| |||||||| ||||| ||||||||| | |||||| || ||||||||||| |||||||||||||||| |||| ||||    
T  12202 aaagagaagttgtttcccaccatgagaaaattaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacatcaga 12292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 450 - 793
Target Start/End: Original strand, 10420963 - 10421310
Alignment:
Q  450 aactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccagannnnnnnnccatattggcccaccacttgcagctgccc 549  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||        |||||||| ||||||||||||||||||||    
T  10420963 aactaattttgaccattagataaactagataacatacttttatcatagacactcaacaccagattttttt-ccatattgacccaccacttgcagctgccc 10421061  T
Q  550 caactctctttcctttctctcctttc------tggcgacgcttgcatgcttcaacaattccaggatgaatataagaggaacagagtgatggcacatgctg 643  Q
    ||||||||||| |||||||||||| |      ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10421062 caactctcttttctttctctccttcccgaatttggtgacgcttgcatgcttcaacaattccaggatgaatataagaggaacagagtgatggcacatgctg 10421161  T
Q  644 gaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcacctgattcacctctattgtctcgtttgcagtatta 743  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  10421162 gaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacatcatca-ctgattcacctctattgtctcgtttgcagtatta 10421260  T
Q  744 taaagtgactaccaagaatggtgaagatccatggcagattgagtggtgaa 793  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10421261 taaagtgactaccaagaatggtgaagatccatggcagattgagtggtgaa 10421310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 422 - 573
Target Start/End: Original strand, 6246802 - 6246955
Alignment:
Q  422 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca--gannnnnnn 519  Q
    |||| ||| |||||| |||||||||||||  ||||||||| ||||||||||  |||||||||||||||||||||||||||| |||| ||               
T  6246802 aaagggaaattgtttcccaccatgggaaagttaattttgaccattagataaggtagagaacatacttttatcatagacactcaacatcattttttttttt 6246901  T
Q  520 nccatattggcccaccacttgcagctgccccaactctctttcctttctctcctt 573  Q
     |||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  6246902 tccatattggcccaccacttgcagctgtcccaactctcttttctttctctcctt 6246955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 422 - 512
Target Start/End: Complemental strand, 6247501 - 6247410
Alignment:
Q  422 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatac-ttttatcatagacacttaacaccaga 512  Q
    |||| ||||||||||  || |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||    
T  6247501 aaagggaagttgtttctcatcatgggaaaactaattttgatcattagataaagtagagaacatactttttatcatagacactcaacaccaga 6247410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 422 - 512
Target Start/End: Complemental strand, 10421611 - 10421521
Alignment:
Q  422 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 512  Q
    |||| |||||||||||||||||||||||| |||||||||| | |||||| || ||||||||||| |||||||||||||||| |||||||||    
T  10421611 aaagggaagttgttttccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacaccaga 10421521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 422 - 512
Target Start/End: Complemental strand, 15481600 - 15481510
Alignment:
Q  422 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 512  Q
    |||| |||||||||| |||| ||||||||||||||||||| |  ||||| || ||||||||||| |||||||||||| ||| |||||||||    
T  15481600 aaagggaagttgtttcccacaatgggaaaactaattttgaccggtagattaaatagagaacatatttttatcatagaaactcaacaccaga 15481510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 427 - 510
Target Start/End: Original strand, 15481058 - 15481141
Alignment:
Q  427 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 510  Q
    |||||||||| ||  ||||||||| |||||||||| | |||||| || ||||||||||| ||||||||||||| || |||||||    
T  15481058 gaagttgtttcccgtcatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagactctcaacacca 15481141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 464 - 510
Target Start/End: Original strand, 50709719 - 50709765
Alignment:
Q  464 attagataaactagagaacatacttttatcatagacacttaacacca 510  Q
    |||||||||| ||||||||||| |||||||||||||||| |||||||    
T  50709719 attagataaagtagagaacatagttttatcatagacactcaacacca 50709765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 438 - 507
Target Start/End: Original strand, 53664246 - 53664315
Alignment:
Q  438 ccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaaca 507  Q
    |||||||||||||   ||| |||| ||||||||||| ||||||||||  |||||||||||||||| ||||    
T  53664246 ccaccatgggaaagtaaatattgaccattagataaaatagagaacatggttttatcatagacactcaaca 53664315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 438 - 510
Target Start/End: Complemental strand, 50710431 - 50710359
Alignment:
Q  438 ccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 510  Q
    |||||||||||||   ||| |||| ||||||||||| ||||||||||   ||||||||||||||| |||||||    
T  50710431 ccaccatgggaaagtaaatattgaccattagataaagtagagaacatgaatttatcatagacactcaacacca 50710359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 440 - 499
Target Start/End: Complemental strand, 2093924 - 2093865
Alignment:
Q  440 accatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 499  Q
    |||||||||||  || | ||||||||||||| || || ||||||||||||||||||||||    
T  2093924 accatgggaaagttattattgatcattagatcaaatatagaacatacttttatcatagac 2093865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 458 - 500
Target Start/End: Original strand, 13856645 - 13856687
Alignment:
Q  458 ttgatcattagataaactagagaacatacttttatcatagaca 500  Q
    |||| ||||||||||| |||||||||||| |||||||||||||    
T  13856645 ttgaccattagataaagtagagaacatacctttatcatagaca 13856687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 357 - 411
Target Start/End: Complemental strand, 37306487 - 37306433
Alignment:
Q  357 aaagtggtgagacctacatgagttttactcaataaaaaagtgaatgttagagaga 411  Q
    |||||||||||||| |||||||||| || ||||| || ||||| |||||||||||    
T  37306487 aaagtggtgagacccacatgagtttcacccaatataagagtgagtgttagagaga 37306433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 2e-30; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 422 - 573
Target Start/End: Complemental strand, 12350684 - 12350528
Alignment:
Q  422 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga-----nnnn 516  Q
    |||| ||| |||||| ||||||||||||| |||||||||| ||||||||||  |||||||||||||||||||||||||||| |||||||||             
T  12350684 aaagggaaattgtttcccaccatgggaaacctaattttgaccattagataaggtagagaacatacttttatcatagacactcaacaccagattttttttt 12350585  T
Q  517 nnnnccatattggcccaccacttgcagctgccccaactctctttcctttctctcctt 573  Q
        |||||||||||||||||||| ||||| ||||||||||||| ||||||||||||    
T  12350584 ttatccatattggcccaccacttgtagctgtcccaactctcttttctttctctcctt 12350528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 422 - 512
Target Start/End: Original strand, 12349985 - 12350075
Alignment:
Q  422 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 512  Q
    |||| |||||||||| ||||||||| |||||||||||| | ||||||||||| || ||||||| ||||||||||||||||| |||||||||    
T  12349985 aaagggaagttgtttcccaccatggaaaaactaattttaaccattagataaagtaaagaacatgcttttatcatagacactcaacaccaga 12350075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 427 - 512
Target Start/End: Original strand, 43971301 - 43971386
Alignment:
Q  427 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 512  Q
    |||||||||| ||||||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||||| ||| |||| ||||    
T  43971301 gaagttgtttcccaccatgggaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaacatcaga 43971386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 427 - 507
Target Start/End: Original strand, 39257657 - 39257737
Alignment:
Q  427 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaaca 507  Q
    |||||||||| ||||||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||||| ||| ||||    
T  39257657 gaagttgtttcccaccatgggaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaaca 39257737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 427 - 512
Target Start/End: Complemental strand, 43972111 - 43972026
Alignment:
Q  427 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 512  Q
    |||||||||| |||| ||||||||  ||||||| | ||||||||||| ||||||||||||||||| |||||||||| |||||||||    
T  43972111 gaagttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacaccaga 43972026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 422 - 510
Target Start/End: Original strand, 43924508 - 43924596
Alignment:
Q  422 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 510  Q
    |||| |||||||||| ||||||||||||| |||||||||| | |||||| || ||||||||||| |||||||||| ||||| |||||||    
T  43924508 aaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcataaacactcaacacca 43924596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 422 - 512
Target Start/End: Complemental strand, 43925048 - 43924958
Alignment:
Q  422 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 512  Q
    |||| |||||||||| |||||||| ||||  ||||||||| | |||||| || ||||||||||| |||||||||||||||| |||||||||    
T  43925048 aaagggaagttgtttcccaccatgagaaagttaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacaccaga 43924958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 434 - 510
Target Start/End: Original strand, 38686333 - 38686409
Alignment:
Q  434 ttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 510  Q
    |||||||||||||||||   ||| |||| ||||||||||| ||||||||||  |||||||||||||||| |||||||    
T  38686333 ttttccaccatgggaaagtaaatattgaccattagataaagtagagaacatggttttatcatagacactcaacacca 38686409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 458 - 507
Target Start/End: Complemental strand, 38687049 - 38687000
Alignment:
Q  458 ttgatcattagataaactagagaacatacttttatcatagacacttaaca 507  Q
    |||||||||||||||| ||||||||||  |||||||||||||||| ||||    
T  38687049 ttgatcattagataaagtagagaacatgattttatcatagacactcaaca 38687000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 453 - 510
Target Start/End: Complemental strand, 39258448 - 39258391
Alignment:
Q  453 taattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 510  Q
    ||||||| | |||||||||||||| |||||||||||||| | |||||||| |||||||    
T  39258448 taattttaaccattagataaactaaagaacatacttttaccgtagacactcaacacca 39258391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 507
Target Start/End: Complemental strand, 33802387 - 33802318
Alignment:
Q  438 ccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaaca 507  Q
    |||||||||||||   ||| |||| ||||| ||||| ||||||||||  |||||||||||||||| ||||    
T  33802387 ccaccatgggaaagtaaatattgaccattaaataaaatagagaacatggttttatcatagacactcaaca 33802318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 9e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 431 - 511
Target Start/End: Original strand, 4554684 - 4554764
Alignment:
Q  431 ttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccag 511  Q
    ||||||||||||||| |||| |||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  4554684 ttgttttccaccatgagaaagctaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccag 4554764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 422 - 573
Target Start/End: Complemental strand, 4555419 - 4555269
Alignment:
Q  422 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccagannnnnnnnc 521  Q
    |||| |||||||||| | ||||||||||| |||||||||| | || |||||| | ||||||||||||||||| |||||||| ||||||| |        |    
T  4555419 aaagggaagttgtttcctaccatgggaaagctaattttgaacgttggataaagtggagaacatacttttatcgtagacactcaacacca-attttttttc 4555321  T
Q  522 catattggcccaccacttgcagctgccccaactctctttcctttctctcctt 573  Q
    |||||||||||||| |||||||||| |||||||||||||  ||||| |||||    
T  4555320 catattggcccaccgcttgcagctgtcccaactctcttttatttctttcctt 4555269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 433 - 499
Target Start/End: Complemental strand, 6805976 - 6805910
Alignment:
Q  433 gttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 499  Q
    |||| |||||||||||||||||||||| | ||| ||||  || | |||||||| |||||||||||||    
T  6805976 gtttcccaccatgggaaaactaattttaaccatcagatttacaaaagaacataattttatcatagac 6805910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 427 - 512
Target Start/End: Original strand, 4993627 - 4993712
Alignment:
Q  427 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 512  Q
    |||||||||||||||||||| ||| |||||||||| ||||| ||||| |||||||||||||||||||||||| ||| |||| ||||    
T  4993627 gaagttgttttccaccatggaaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaacatcaga 4993712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 427 - 512
Target Start/End: Original strand, 4975719 - 4975804
Alignment:
Q  427 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 512  Q
    |||||||||| ||||||||| ||| |||||||||| ||||| ||||| |||||||||||||||||||||||| ||| |||| ||||    
T  4975719 gaagttgtttcccaccatggaaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaacatcaga 4975804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 427 - 510
Target Start/End: Complemental strand, 4976530 - 4976447
Alignment:
Q  427 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 510  Q
    |||||||||| |||| ||||||||  ||||||| | ||||||||||| ||||||||||||||||| |||||||||| |||||||    
T  4976530 gaagttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacacca 4976447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 427 - 510
Target Start/End: Complemental strand, 4994437 - 4994354
Alignment:
Q  427 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 510  Q
    |||||||||| |||| ||||||||  ||||||| | ||||||||||| ||||||||||||||||| |||||||||| |||||||    
T  4994437 gaagttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacacca 4994354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 463 - 510
Target Start/End: Original strand, 42369702 - 42369749
Alignment:
Q  463 cattagataaactagagaacatacttttatcatagacacttaacacca 510  Q
    ||||||||||| ||||||||||| |||||||||||||||| |||||||    
T  42369702 cattagataaagtagagaacataattttatcatagacactcaacacca 42369749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 434 - 507
Target Start/End: Original strand, 8536167 - 8536240
Alignment:
Q  434 ttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaaca 507  Q
    |||||||||||||||||   ||| ||||  |||||||||| ||||||||||  |||||||||||||||| ||||    
T  8536167 ttttccaccatgggaaagtaaatattgacgattagataaagtagagaacatgattttatcatagacactcaaca 8536240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 458 - 510
Target Start/End: Complemental strand, 8536880 - 8536828
Alignment:
Q  458 ttgatcattagataaactagagaacatacttttatcatagacacttaacacca 510  Q
    |||| ||||||||||| ||||||||||  |||||||||||||||| |||||||    
T  8536880 ttgaccattagataaagtagagaacatggttttatcatagacactcaacacca 8536828  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 422 - 510
Target Start/End: Original strand, 37545694 - 37545782
Alignment:
Q  422 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 510  Q
    |||| |||||||||| |||||||||||||  ||| ||||| |||||||| || ||  ||||| | | |||||||||||||| |||||||    
T  37545694 aaagggaagttgtttcccaccatgggaaagttaaatttgaccattagattaagtaatgaacacattcttatcatagacactcaacacca 37545782  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 422 - 510
Target Start/End: Complemental strand, 41519955 - 41519867
Alignment:
Q  422 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 510  Q
    |||| |||||| ||| |||||||||||||  |  |||||| | ||| ||||| ||||||||||||||||| |||||||||  |||||||    
T  41519955 aaagggaagttttttcccaccatgggaaagttttttttgaccgttaaataaagtagagaacatacttttaccatagacacccaacacca 41519867  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 357 - 416
Target Start/End: Original strand, 34142236 - 34142295
Alignment:
Q  357 aaagtggtgagacctacatgagttttactcaataaaaaagtgaatgttagagagattgtt 416  Q
    ||||| ||||||| ||||||| ||| |  ||||||||||||||||||| |||||||||||    
T  34142236 aaagtagtgagacatacatgaatttcatccaataaaaaagtgaatgtttgagagattgtt 34142295  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 428 - 502
Target Start/End: Complemental strand, 42370974 - 42370900
Alignment:
Q  428 aagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacact 502  Q
    ||||||||| |||||||||||||   ||| |||  ||||||||||| | ||||| ||| ||||||||||||||||    
T  42370974 aagttgtttcccaccatgggaaagtaaatattggccattagataaagtggagaatatagttttatcatagacact 42370900  T

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Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 427 - 512
Target Start/End: Original strand, 27763436 - 27763521
Alignment:
Q  427 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 512  Q
    |||||||||| |||||| ||||||||||||||||| | |||||| || ||||||||||| |||||||| ||||||| |||||||||    
T  27763436 gaagttgtttcccaccaagggaaaactaattttgaccgttagattaaatagagaacatatttttatcaaagacactcaacaccaga 27763521  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 373 - 411
Target Start/End: Complemental strand, 10067321 - 10067283
Alignment:
Q  373 catgagttttactcaataaaaaagtgaatgttagagaga 411  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  10067321 catgagttttattcaataaaaaagtgattgttagagaga 10067283  T

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Target: chr7 (Bit Score: 46; Significance: 8e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 429 - 510
Target Start/End: Original strand, 46757449 - 46757530
Alignment:
Q  429 agttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 510  Q
    ||||||||||||||||| ||||   ||| |||| ||||||||||| ||||||||||| |||||||||||||||| |||||||    
T  46757449 agttgttttccaccatgagaaagtaaatattgaccattagataaagtagagaacataattttatcatagacactcaacacca 46757530  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 357 - 417
Target Start/End: Complemental strand, 29310503 - 29310443
Alignment:
Q  357 aaagtggtgagacctacatgagttttactcaataaaaaagtgaatgttagagagattgttc 417  Q
    |||||||||||||| |||||||||| || |||||||||||||| ||||||| ||| |||||    
T  29310503 aaagtggtgagacccacatgagtttcacccaataaaaaagtgagtgttagaaagagtgttc 29310443  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 429 - 512
Target Start/End: Complemental strand, 46759285 - 46759202
Alignment:
Q  429 agttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 512  Q
    |||||||| ||| ||| | ||| ||||| |||| ||||||||||| |||||||||||||| ||| ||| | |||||||||||||    
T  46759285 agttgtttcccatcatagcaaagctaatcttgaccattagataaagtagagaacatacttctattatacatacttaacaccaga 46759202  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 357 - 411
Target Start/End: Complemental strand, 41873517 - 41873463
Alignment:
Q  357 aaagtggtgagacctacatgagttttactcaataaaaaagtgaatgttagagaga 411  Q
    |||||| ||||||  |||||||||| || |||||||||||||| |||||||||||    
T  41873517 aaagtgatgagactcacatgagtttcacccaataaaaaagtgagtgttagagaga 41873463  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 429 - 510
Target Start/End: Original strand, 27599236 - 27599317
Alignment:
Q  429 agttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 510  Q
    |||||||| |||||||||||||  ||| ||||| |||||||| || ||  ||||| | | |||||||||||||| |||||||    
T  27599236 agttgtttcccaccatgggaaagttaaatttgaccattagattaagtaatgaacacattcttatcatagacactcaacacca 27599317  T

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Target: scaffold0071 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 435 - 497
Target Start/End: Complemental strand, 11935 - 11873
Alignment:
Q  435 tttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatag 497  Q
    ||||||||||||||||  |||| |||| |||||||| || ||||||||||| |||||||||||    
T  11935 tttccaccatgggaaagttaatcttgaccattagattaagtagagaacatatttttatcatag 11873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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