View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0602-INSERTION-21 (Length: 960)

Name: NF0602-INSERTION-21
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0602-INSERTION-21
NF0602-INSERTION-21
[»] scaffold0048 (8 HSPs)
scaffold0048 (152-700)||(84543-85098)
scaffold0048 (7-160)||(84367-84521)
scaffold0048 (714-956)||(60443-60685)
scaffold0048 (480-700)||(48102-48323)
scaffold0048 (571-700)||(60734-60863)
scaffold0048 (797-956)||(85236-85395)
scaffold0048 (742-956)||(47839-48064)
scaffold0048 (480-590)||(60866-60977)
[»] scaffold0185 (3 HSPs)
scaffold0185 (694-956)||(7100-7371)
scaffold0185 (395-518)||(7504-7631)
scaffold0185 (301-398)||(7646-7743)


Alignment Details
Target: scaffold0048 (Bit Score: 381; Significance: 0; HSPs: 8)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 152 - 700
Target Start/End: Original strand, 84543 - 85098
Alignment:
Q  152 tctttttattgagagaagccctttcttttttgaaaaatagaaaaaagcactaagctcccattcttatttactcgcttcactttacttctaatgtgtgatc 251  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  84543 tctttttattgggagaagccctttcttttttgaaaaatagaaaaaatcactaagctcccattcttatttactcgcttcactttacttcaaatgtgtgatc 84642  T
Q  252 atccctttgaaacaagcactaaaacccataatatattaaagcattgatcgctaacgacttttttggctcaaaaatcattttttagacacagatattaata 351  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  84643 atccctttgaaaaaagcactaaaacccataatatattaaagcattgatcgctaaagacttttttggctcaaaaatcattttttagacacaggtattaata 84742  T
Q  352 cccttgtaatgaaaattctttgtgaagtaaattttctaaacaacaactttttctacaagcatttgttagataataaatcttgtgtcagaaagcaatttac 451  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  84743 cccttgtaatgaaaattctttgtgaagtaaattttctatacaacaactttttctacaagcatttgttagataataaatcttgtgtcagaaagcaatttac 84842  T
Q  452 aaactccatcatgtaaattctccctgtt---tgctgtagcatttccacacggtttttctgtgtaccggatcaagatcgctggtttgagattggacg---- 544  Q
    |||||||||||| |||||||||||||||   ||||||||||||||||||||||||||||||| |||||||||||| || || |||||||||||| |        
T  84843 aaactccatcatataaattctccctgtttgctgctgtagcatttccacacggtttttctgtgaaccggatcaagaccgttgatttgagattggatgatta 84942  T
Q  545 tttacatttcaagctcattttcatacggtaacacaatctcatccgctgatttaagattgaactgcttagatctgttacattgtcctgttacatgctgtaa 644  Q
     ||||||||||||||||||||  | | |||| ||||||||||||||  ||||||||||  ||  ||||||| ||| ||| | ||||||||| || |||||    
T  84943 attacatttcaagctcatttttctgcagtaaaacaatctcatccgccaatttaagatttgacctcttagatttgtgacagtatcctgttacttgttgtaa 85042  T
Q  645 ctgcaggaaatccaatttgaaggaaaggcaaaggagataaatgtgaaactgtttct 700  Q
    ||||| ||||||||||| |||||||||||||||| ||||| ||||||| |||||||    
T  85043 ctgcatgaaatccaattcgaaggaaaggcaaaggggataattgtgaaattgtttct 85098  T

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Target: scaffold0048; HSP #2
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 84367 - 84521
Alignment:
Q  7 agaaagaaaaacgataaagtatctttatgaacgacgaaggagctctaaacataacttatttctacaacaacaaaaccatgtggcagttttttatttgatc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  84367 agaaagaaaaacgataaagtatctttatgaacgacgaaggagccctaaacataacttatttctacaacaacaaaaccacgtggcagttttttatttgatc 84466  T
Q  107 agatcgtcctactgaaaaggtgaatc-ggaccgaagaatttccctttctttttat 160  Q
    | |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  84467 aaatcgtcctactgaaaaggtgaatcgggaccgaagaatttccctttctttttat 84521  T

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Target: scaffold0048; HSP #3
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 714 - 956
Target Start/End: Complemental strand, 60685 - 60443
Alignment:
Q  714 tgtggctaataaagctttgttcgggatgtccaaaataatgctcattatggtacttcactttctatacatccatgtattttgggccatatagcaacatctt 813  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  60685 tgtggctcataaagctttgttcgggaagtccaaaataatgctcattatggtacttcactttctatacatccatgtattttgcgccatatagcaacatctt 60586  T
Q  814 ttggcagctatagtttgagttgctaagagagaaaaggaaggatccatattgaagtc-agaaaattccaaatagtttcctgaaaaacaccgtaaaatacta 912  Q
    ||||||| ||||||||||||| | ||||||||||||||| ||||||||| || ||| | ||||| ||||||| |||||  |||||||| || ||||||||    
T  60585 ttggcagatatagtttgagttccaaagagagaaaaggaa-gatccatatcgatgtcaaaaaaataccaaatattttcccaaaaaacacagt-aaatacta 60488  T
Q  913 agcttattagaacc-aacacattgcataaaactcgaacttctttt 956  Q
    ||||||| || ||| || | |||||||||||||| || |||||||    
T  60487 agcttatgagtaccaaagaaattgcataaaactcaaaattctttt 60443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #4
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 480 - 700
Target Start/End: Complemental strand, 48323 - 48102
Alignment:
Q  480 tgctgtagcatttccacacggtttt-tctgtgtaccggatcaagatcgctggtttgagattggacgtttacatttcaagctcattttcatacggtaacac 578  Q
    |||||||||||||||||| |||||  | |||||||| ||||||||  | || ||||||||  |||||||||||||||| ||||||||||| |||||| ||    
T  48323 tgctgtagcatttccacatggtttaatgtgtgtaccagatcaagactgttgatttgagatcagacgtttacatttcaaactcattttcattcggtaaaac 48224  T
Q  579 aatctcatccgctgatttaagattgaactgcttagatctgttacattgtcctgttacatgctgtaactgcaggaaatccaatttgaaggaaaggcaaagg 678  Q
    ||||| ||||||  |||||| |||  ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  48223 aatcttatccgccaatttaatatttgactgcttagatctgttacagtgtcctgttacatgctgtaactgtaggaaatccaattcgaaggaaaggcaaagg 48124  T
Q  679 agataaatgtgaaactgtttct 700  Q
     |||||||||||||||||||||    
T  48123 ggataaatgtgaaactgtttct 48102  T

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Target: scaffold0048; HSP #5
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 571 - 700
Target Start/End: Complemental strand, 60863 - 60734
Alignment:
Q  571 ggtaacacaatctcatccgctgatttaagattgaactgcttagatctgttacattgtcctgttacatgctgtaactgcaggaaatccaatttgaaggaaa 670  Q
    ||||| |||||| |||||||  |||||| |||  ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  60863 ggtaaaacaatcacatccgccaatttaatatttgactgcttagatctgttacagtgtcttgttacatgctgtaactgcaggaaatccaatttgaaggaaa 60764  T
Q  671 ggcaaaggagataaatgtgaaactgtttct 700  Q
    |||||||| |||||||||||||||||||||    
T  60763 ggcaaaggggataaatgtgaaactgtttct 60734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #6
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 797 - 956
Target Start/End: Original strand, 85236 - 85395
Alignment:
Q  797 ccatatagcaacatcttttggcagctatagtttgagttgctaagagagaaaaggaaggatccatattgaagtcag-aaaattccaaatagtttcctgaaa 895  Q
    |||||| ||||||||||| |||| |||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||    
T  85236 ccatatggcaacatctttcggcacctatagtttgagttgcaaagagagaaaaggaa-gatccatattgaagtcagaaaaattccaaatagtttcccgaaa 85334  T
Q  896 aacaccgtaaaatactaagcttattagaacc-aacacattgcataaaactcgaacttctttt 956  Q
    ||||| || |||||||||||||||||||||| |||| ||||||  |||||| ||||||||||    
T  85335 aacacagt-aaatactaagcttattagaaccaaacaaattgcacgaaactcaaacttctttt 85395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #7
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 742 - 956
Target Start/End: Complemental strand, 48064 - 47839
Alignment:
Q  742 tccaaaataatgctcattatggtacttcactttctatac-----------atccatgtattttgggccatatagcaacatcttttggcagctatagtttg 830  Q
    ||||||||||| ||| |||||||||||||||||||||||           ||||||||| ||||| ||||||||||||||||||||||| ||||||||||    
T  48064 tccaaaataatcctcgttatggtacttcactttctataccgaccctttacatccatgtactttggaccatatagcaacatcttttggcatctatagtttg 47965  T
Q  831 agttgctaagagagaaaaggaaggatccatattgaagtcagaaa-attccaaatagtttcctgaaaaacaccgtaaaatactaagcttattagaacc-aa 928  Q
    |||| | ||||||||||||||| |||| | |||||||| | ||| ||||||||||||||||  ||||||||| | ||||||||| ||||| |||||| ||    
T  47964 agttccaaagagagaaaaggaa-gatcgaaattgaagtaaaaaatattccaaatagtttcccaaaaaacaccat-aaatactaatcttatgagaaccaaa 47867  T
Q  929 cacattgcataaaactcgaacttctttt 956  Q
    || ||||||| |||||| ||||||||||    
T  47866 caaattgcatgaaactcaaacttctttt 47839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 480 - 590
Target Start/End: Complemental strand, 60977 - 60866
Alignment:
Q  480 tgctgtagcatttccacacggtttt-tctgtgtaccggatcaagatcgctggtttgagattggacgtttacatttcaagctcattttcatacggtaacac 578  Q
    ||||| ||||||||||||||||||  | ||| ||||||||||| |    || ||||||||  |||||||||||||||| |||||||||||  ||||| ||    
T  60977 tgctgcagcatttccacacggtttaatgtgtttaccggatcaaaactattgatttgagatcagacgtttacatttcaaactcattttcattaggtaaaac 60878  T
Q  579 aatctcatccgc 590  Q
    ||||||||||||    
T  60877 aatctcatccgc 60866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 147; Significance: 5e-77; HSPs: 3)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 694 - 956
Target Start/End: Complemental strand, 7371 - 7100
Alignment:
Q  694 tgtttcttcactgccatctctgtggctaataaagctttgttcgggatgtccaaaataatgctcattatggtacttcactttctatac-----------at 782  Q
    ||||||||||||| |||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||           ||    
T  7371 tgtttcttcactgtcatct--gtggctaataaagctttgttcgggaagtccaaaataatgctcattatggtacttcactttctataccgaccctttacat 7274  T
Q  783 ccatgtattttgggccatatagcaacatcttttggcagctatagtttgagttgctaagagagaaaaggaaggatccatattgaagtc-agaaaattccaa 881  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||| | ||||||||||    
T  7273 ccatgtactttggaccatatagcaacatcttttggcagctatagtttgagttgcaaagagagaaaaggaa-gatccatattgatgtcaaaaaaattccaa 7175  T
Q  882 atagtttcctgaaaaacaccgtaaaatactaagcttattagaaccaa-cacattgcataaaactcgaacttctttt 956  Q
    |||||||||  ||| ||||||| ||||||||||||||| |||||||| ||||||||||||||||| ||||||||||    
T  7174 atagtttcccaaaacacaccgt-aaatactaagcttatgagaaccaaccacattgcataaaactcaaacttctttt 7100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 395 - 518
Target Start/End: Complemental strand, 7631 - 7504
Alignment:
Q  395 caactttttctacaagcatttgttagataataaatcttgtgtcagaaagcaatttacaaactccatcatgtaaattctccctgtt---tgctgtagcatt 491  Q
    |||||||||||||||||| |||||| |||||||||||  |||||||||||||| |||||| ||||||||| |||||||| |||||   ||||||||||||    
T  7631 caactttttctacaagcacttgttacataataaatctattgtcagaaagcaatatacaaattccatcatgcaaattctctctgtttgctgctgtagcatt 7532  T
Q  492 tccacacggtttt-tctgtgtaccggat 518  Q
    | ||||||||||| | ||||||||||||    
T  7531 tacacacggttttatgtgtgtaccggat 7504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 301 - 398
Target Start/End: Complemental strand, 7743 - 7646
Alignment:
Q  301 gctaacgacttttttggctcaaaaatcattttttagacacagatattaatacccttgtaatgaaaattctttgtgaagtaaattttctaaacaacaac 398  Q
    ||||| || |||||| ||| ||| ||||||||||||||| |  ||||||||||  || |||| ||||| ||||  |||||||||||||| ||||||||    
T  7743 gctaaagatttttttagcttaaagatcattttttagacagatgtattaataccggtgaaatgcaaattttttgcaaagtaaattttctatacaacaac 7646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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