View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0602-INSERTION-22 (Length: 945)
Name: NF0602-INSERTION-22
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602-INSERTION-22 |
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Alignment Details
Target: chr4 (Bit Score: 542; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 8 - 642
Target Start/End: Complemental strand, 35745420 - 35744796
Alignment:
| Q |
8 |
aatggagttatcattcgtaggagcagaccaattgattttaatggtagagattcatacgaagatcatggcattcagagatatcatggacttagctccatgt |
107 |
Q |
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| T |
35745420 |
aatggagttatcattcgtaggagcagaccaattgattttaatggtagagattcatatgaagatcatggcattcagagatatcatggacttagctccatgt |
35745321 |
T |
|
| Q |
108 |
aacagttctgcttccttgcgcgaggtatgtgacataataagagtttaacttcgtaacattaagtgacagatttcagtttcctgatctgttgtaaaatgac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35745320 |
aacagttctgcttccttgcgcgaggtatgtgacataataagagtttaacttcgtaacattaagtgacagatttcagtttcct---ctgttgtaaaatgac |
35745224 |
T |
|
| Q |
208 |
aatcattattcttggnnnnnnnnnnnnnnnatatgtcacattgcagatagttatgagaacactgaatgatctacaaaggctatatccagagatcataaca |
307 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35745223 |
aatcattattcttggtttttttttttt---atatgtcacattgcagatagttatgagaacactgaatgatctacaaaggctatatccagagatcataaca |
35745127 |
T |
|
| Q |
308 |
aaaactcaactgtcaaagattgaggacaagtctattgatcaggtaattatagtttcaacattaaataagctgcacctgaaatgaaattattctaattatg |
407 |
Q |
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| T |
35745126 |
aaaactcaagtgtcaaagattgaggacaagtctattgatcaggtaattatagtttcaacattaaataagctgcacctgaaatgaaattattctaattatg |
35745027 |
T |
|
| Q |
408 |
ataattactgaaatcttagcatcctgaaaatctaaatgtggacatttattttatactaggctgtggcctacttctgtgaggctttgaagtctcttggaga |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35745026 |
ataattactgaaatcttagcatcctgaaaatctaaatgtggacatttattttatactaggctgtggcctacttctgtgaggctttgaagtctcttggaga |
35744927 |
T |
|
| Q |
508 |
gtcatggatgatggacaatgattgcatggataagcttgatattgcatttccaacatgcaaggatgacaacaacatgcgtcaattgggtatgttactaatg |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35744926 |
gtcatggatgatggacaatgattgcatggataagcttgatattgcatttccaacatgcaaggatgacaacaacatgcgtcaattgggtatgttattaatg |
35744827 |
T |
|
| Q |
608 |
atcttagatatgcatcaacaatgtaaaaacttctt |
642 |
Q |
| |
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|||| ||||||||||||||||||||||||||| |
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| T |
35744826 |
atct----tatgcatcaacaatgtaaaaacttctt |
35744796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 686 - 945
Target Start/End: Complemental strand, 35744757 - 35744499
Alignment:
| Q |
686 |
gaaagtgatataacaaaagtgacatcaatgtaaaatgtgattggattcgaggcctgcataaaagtgcatactcgttaaaaatgcaataattatctcctcc |
785 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35744757 |
gaaagtgatataacaaaagtgacatcaatgtaaaatgtgattggattcgaggcctgcataaaagtgcatactcgttaaaaatgcaataattatctcctcc |
35744658 |
T |
|
| Q |
786 |
tgcgttgcatgggttaaaatactagtttgtcagttttcaagcaatttgatttgttgtgcaggtgaaactttgctggtgactctagattatttgatgaagt |
885 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35744657 |
tgcgttgcattggttaaaatactagtttgtcagttttcaagcaatttgatttgttgtgcaggtgaaactttgctggtgactctagattatttgatgaagt |
35744558 |
T |
|
| Q |
886 |
tagcaagtgagagatttgacatagaagaagatgaacaaaagaaaagaattcagtccaaag |
945 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35744557 |
tagcaagtgagagatttgacatagaagaagatgaacaaaag-aaagaattcagtccaaag |
35744499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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