View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0602-INSERTION-24 (Length: 726)

Name: NF0602-INSERTION-24
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0602-INSERTION-24
NF0602-INSERTION-24
[»] chr8 (11 HSPs)
chr8 (209-707)||(3385682-3386184)
chr8 (8-79)||(32805914-32805985)
chr8 (80-123)||(11335646-11335689)
chr8 (80-123)||(10117049-10117092)
chr8 (644-690)||(37466468-37466514)
chr8 (77-123)||(40640354-40640400)
chr8 (397-438)||(3404826-3404867)
chr8 (80-113)||(9015895-9015928)
chr8 (80-109)||(20524198-20524227)
chr8 (82-123)||(34326263-34326304)
chr8 (80-113)||(45045456-45045489)
[»] chr5 (12 HSPs)
chr5 (225-417)||(41804843-41805040)
chr5 (80-123)||(33075083-33075126)
chr5 (77-123)||(14772622-14772668)
chr5 (80-123)||(71277-71320)
chr5 (80-123)||(5984062-5984105)
chr5 (79-110)||(15549403-15549434)
chr5 (80-123)||(35032349-35032392)
chr5 (83-122)||(41814402-41814441)
chr5 (89-123)||(26045283-26045317)
chr5 (77-115)||(37554423-37554461)
chr5 (77-115)||(37685046-37685084)
chr5 (79-120)||(31691337-31691378)
[»] chr6 (5 HSPs)
chr6 (8-79)||(6094932-6095003)
chr6 (80-123)||(18886387-18886430)
chr6 (639-690)||(29734438-29734489)
chr6 (77-112)||(33689258-33689293)
chr6 (639-688)||(10401950-10401999)
[»] chr2 (8 HSPs)
chr2 (79-123)||(4563875-4563919)
chr2 (80-123)||(15859630-15859673)
chr2 (82-112)||(31211242-31211272)
chr2 (77-123)||(32143482-32143528)
chr2 (82-115)||(604883-604916)
chr2 (82-115)||(26269374-26269407)
chr2 (82-115)||(31175107-31175140)
chr2 (79-112)||(32218654-32218687)
[»] scaffold0631 (1 HSPs)
scaffold0631 (80-123)||(4365-4408)
[»] chr1 (7 HSPs)
chr1 (80-123)||(48083583-48083626)
chr1 (80-123)||(34953975-34954018)
chr1 (82-123)||(42761471-42761512)
chr1 (79-123)||(13048675-13048719)
chr1 (79-123)||(13053672-13053716)
chr1 (77-123)||(6758564-6758610)
chr1 (79-112)||(13043418-13043451)
[»] scaffold0149 (1 HSPs)
scaffold0149 (80-123)||(24624-24667)
[»] chr7 (12 HSPs)
chr7 (80-123)||(22752578-22752621)
chr7 (83-123)||(21886485-21886525)
chr7 (77-120)||(30138864-30138907)
chr7 (77-112)||(33935027-33935062)
chr7 (86-121)||(37489535-37489570)
chr7 (82-121)||(44416613-44416652)
chr7 (80-122)||(4089868-4089910)
chr7 (79-121)||(9930408-9930450)
chr7 (644-690)||(33316147-33316193)
chr7 (645-690)||(2443342-2443387)
chr7 (82-123)||(2943293-2943334)
chr7 (80-121)||(31813431-31813472)
[»] chr4 (18 HSPs)
chr4 (80-123)||(3511727-3511770)
chr4 (80-122)||(38298109-38298151)
chr4 (90-123)||(10308253-10308286)
chr4 (80-120)||(18423913-18423953)
chr4 (77-121)||(35151737-35151781)
chr4 (639-690)||(13483181-13483232)
chr4 (80-123)||(21142169-21142212)
chr4 (80-123)||(35425270-35425313)
chr4 (80-123)||(40952427-40952470)
chr4 (639-690)||(49649147-49649198)
chr4 (639-690)||(52353833-52353884)
chr4 (644-690)||(2472892-2472938)
chr4 (645-687)||(20943622-20943664)
chr4 (82-123)||(4406322-4406363)
chr4 (82-115)||(24331451-24331484)
chr4 (77-110)||(36786181-36786214)
chr4 (645-690)||(41534218-41534263)
chr4 (82-123)||(54508187-54508228)
[»] chr3 (12 HSPs)
chr3 (80-123)||(10872751-10872794)
chr3 (80-123)||(22497030-22497073)
chr3 (80-123)||(24722766-24722809)
chr3 (77-123)||(3648775-3648821)
chr3 (80-121)||(35987510-35987551)
chr3 (80-120)||(50466834-50466874)
chr3 (80-123)||(29389345-29389388)
chr3 (80-123)||(47334660-47334703)
chr3 (80-123)||(51060681-51060724)
chr3 (80-110)||(26243710-26243740)
chr3 (644-690)||(49492033-49492079)
chr3 (639-688)||(45301187-45301236)


Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 209 - 707
Target Start/End: Original strand, 3385682 - 3386184
Alignment:
Q  209 aatgatgtcgtgttattatggttataa----atataagtaagggatgttttattaagtacattgaatgactccattgagattttggatcttcagcccctc 304  Q
    ||||||||| |||||||||||||||||    ||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||| || ||    
T  3385682 aatgatgtcatgttattatggttataaataaatataagtaagggatattttattaagtaaattgaacgactccattgagattttggatcttcagtccttc 3385781  T
Q  305 aagcaaattcttttggtcccaaatttacaacttcaaaaccaatatccttcgatacccaaattaaactctcatggtgaaccaattctgaatctgggccata 404  Q
    || |||||||| ||||||| |||||| |||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| ||||| |||||||    
T  3385782 aaacaaattctattggtcctaaatttgcaacttcaaaaccaatatccttcgatgcccaaatttaactctcgtggtgaaccaattctaaatcttggccata 3385881  T
Q  405 ttctaaaagataatttaaccaagaaaatatataattgtttctaaagtaaaattgaaagtcgattgaaaccatacaatttcaaaaattaccaaacaccaat 504  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  3385882 ttctaaaagataatttgaccaagaaaatatataattgtttttaaagtaaaattaaaagtccattgaaaccatacaatttcaaaaattaccaaacaccaat 3385981  T
Q  505 agaggggctactccatatagtaccgctcaaagttagaatatattgttaaatatgtttgtgg-ttctacaaatataccagctatttgtttcagttcttata 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || ||||||||||||| |||||||||||||||||||||    
T  3385982 agaggggctactccatatagtaccgctcaaagttagaatatattgttaaatatatatgtggtttttacaaatataccaactatttgtttcagttcttata 3386081  T
Q  604 aaaagtttcttcgatttttagtccttcnnnnnnnnttcaacttcacttttagtctcttcttttaagtaaacttatatgtaaaattcaaatggtatggtaa 703  Q
    |||||||||||||||||||| ||||||        || |||||||| |||| ||||| |||||||||||| ||||||||| |||| ||||| ||||| ||    
T  3386082 aaaagtttcttcgatttttaatccttcaaaaaaattt-aacttcacatttaatctctccttttaagtaaatttatatgtataatttaaatgatatggcaa 3386180  T
Q  704 taca 707  Q
    ||||    
T  3386181 taca 3386184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 32805985 - 32805914
Alignment:
Q  8 ctgtcgtaccatcactaaaacacccggcatcgacattgatcttaacataaccactaggaggtggaatccact 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32805985 ctgtcgtaccatcactaaaacacccggcatcgacattgatcttaacataaccactaggaggtggaatccact 32805914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 11335646 - 11335689
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    |||||||||||||||||||||||||||||||  |||||||||||    
T  11335646 atatacattattaattgaatgaatctaaaatgcaaagttttgct 11335689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 10117049 - 10117092
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    |||||||| |||||||||||||||||||||| |||| |||||||    
T  10117049 atatacatcattaattgaatgaatctaaaatgtaaatttttgct 10117092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 644 - 690
Target Start/End: Complemental strand, 37466514 - 37466468
Alignment:
Q  644 cttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 690  Q
    |||||||||| |||||| |||| ||||||||| ||||||||||||||    
T  37466514 cttcactttttgtctctcctttaaagtaaactcatatgtaaaattca 37466468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 40640354 - 40640400
Alignment:
Q  77 actatatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    ||||| ||||| ||||||||||||||||||||||  |||||||||||    
T  40640354 actatgtacatcattaattgaatgaatctaaaatgcaaagttttgct 40640400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 397 - 438
Target Start/End: Original strand, 3404826 - 3404867
Alignment:
Q  397 gggccatattctaaaagataatttaaccaagaaaatatataa 438  Q
    |||||||||||||||||||||||| |||||  ||||||||||    
T  3404826 gggccatattctaaaagataatttgaccaaataaatatataa 3404867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 9015895 - 9015928
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatata 113  Q
    |||||||| |||||||||||||||||||||||||    
T  9015895 atatacatcattaattgaatgaatctaaaatata 9015928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 109
Target Start/End: Complemental strand, 20524227 - 20524198
Alignment:
Q  80 atatacattattaattgaatgaatctaaaa 109  Q
    ||||||||||||||||||||||||||||||    
T  20524227 atatacattattaattgaatgaatctaaaa 20524198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 34326304 - 34326263
Alignment:
Q  82 atacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    |||||| ||||||||||||||||||||||  |||||||||||    
T  34326304 atacatcattaattgaatgaatctaaaatgcaaagttttgct 34326263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 45045456 - 45045489
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatata 113  Q
    |||||||| |||||||||||||||||||||||||    
T  45045456 atatacatcattaattgaatgaatctaaaatata 45045489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 225 - 417
Target Start/End: Original strand, 41804843 - 41805040
Alignment:
Q  225 tatggttataaatataagtaagggatgttttattaagtacattgaatgactccattgagattttggatcttcagcccctcaagcaaattcttttggtccc 324  Q
    ||||||||||| || | ||||| |||||||||||||||||||||||||| |||||| | ||||||| ||||  | ||||||||||||||||  ||||||     
T  41804843 tatggttataattaaaggtaagtgatgttttattaagtacattgaatgagtccattcatattttggttctttggtccctcaagcaaattctactggtcct 41804942  T
Q  325 aaatttacaacttcaaaaccaatatccttcgatacccaaattaaactc-----tcatggtgaaccaattctgaatctgggccatattctaaaagataa 417  Q
    |||||| |||||| |||||||| |||||| ||| || | ||| |||||     |  |||||||| |||||||||||| || |||||||||||||||||    
T  41804943 aaatttgcaacttgaaaaccaacatccttggatgccaatatttaactcttgtgttgtggtgaactaattctgaatctaggtcatattctaaaagataa 41805040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 123
Target Start/End: Complemental strand, 33075126 - 33075083
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  33075126 atatacgttattaattgaatgaatctaaaatataaagttttgct 33075083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 14772622 - 14772668
Alignment:
Q  77 actatatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||    
T  14772622 actatatacatcattaattgaattaatctaaaatataaagttttgct 14772668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 123
Target Start/End: Complemental strand, 71320 - 71277
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    |||||||| ||||||||||||||||||||||||| | |||||||    
T  71320 atatacatcattaattgaatgaatctaaaatatagatttttgct 71277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 5984062 - 5984105
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    |||||||| ||||||||||||||||||||||  |||||||||||    
T  5984062 atatacatcattaattgaatgaatctaaaatgcaaagttttgct 5984105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 110
Target Start/End: Original strand, 15549403 - 15549434
Alignment:
Q  79 tatatacattattaattgaatgaatctaaaat 110  Q
    ||||||||||||||||||||||||||||||||    
T  15549403 tatatacattattaattgaatgaatctaaaat 15549434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 35032349 - 35032392
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    |||||||| |||||||||||||||||||||| |||| |||||||    
T  35032349 atatacataattaattgaatgaatctaaaatgtaaatttttgct 35032392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 122
Target Start/End: Complemental strand, 41814441 - 41814402
Alignment:
Q  83 tacattattaattgaatgaatctaaaatataaagttttgc 122  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  41814441 tacattattaattgaatgaatctaaaatgtaaatttttgc 41814402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 26045317 - 26045283
Alignment:
Q  89 attaattgaatgaatctaaaatataaagttttgct 123  Q
    ||||||||||||||||||||||||||| |||||||    
T  26045317 attaattgaatgaatctaaaatataaatttttgct 26045283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 37554423 - 37554461
Alignment:
Q  77 actatatacattattaattgaatgaatctaaaatataaa 115  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  37554423 actacatacattattaattgaatgaatctaaaaaataaa 37554461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 37685046 - 37685084
Alignment:
Q  77 actatatacattattaattgaatgaatctaaaatataaa 115  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  37685046 actacatacattattaattgaatgaatctaaaaaataaa 37685084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 31691337 - 31691378
Alignment:
Q  79 tatatacattattaattgaatgaatctaaaatataaagtttt 120  Q
    ||||||||| ||||||||||||||||| ||||||||| ||||    
T  31691337 tatatacatcattaattgaatgaatctcaaatataaattttt 31691378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 6094932 - 6095003
Alignment:
Q  8 ctgtcgtaccatcactaaaacacccggcatcgacattgatcttaacataaccactaggaggtggaatccact 79  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  6094932 ctgtcgtaccatcactaaaacacccggcatcgacgttgatcttaacataaccactaggaagtggaatccact 6095003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 18886387 - 18886430
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    |||||| ||||||||||||||| |||||||||||||||||||||    
T  18886387 atatacgttattaattgaatgactctaaaatataaagttttgct 18886430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 639 - 690
Target Start/End: Original strand, 29734438 - 29734489
Alignment:
Q  639 ttcaacttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 690  Q
    |||| |||||||| ||||||||  ||||||||||||||||||||| ||||||    
T  29734438 ttcatcttcacttctagtctctcattttaagtaaacttatatgtagaattca 29734489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 112
Target Start/End: Complemental strand, 33689293 - 33689258
Alignment:
Q  77 actatatacattattaattgaatgaatctaaaatat 112  Q
    ||||||||||||||||||||||||||| ||||||||    
T  33689293 actatatacattattaattgaatgaatataaaatat 33689258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 639 - 688
Target Start/End: Original strand, 10401950 - 10401999
Alignment:
Q  639 ttcaacttcacttttagtctcttcttttaagtaaacttatatgtaaaatt 688  Q
    |||| |||||||||| ||||||||||| ||||||||| ||||||| ||||    
T  10401950 ttcagcttcacttttggtctcttctttaaagtaaactcatatgtataatt 10401999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 4563919 - 4563875
Alignment:
Q  79 tatatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  4563919 tatatacattattaattgaatgaatctaaaatataaacttttgct 4563875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 15859630 - 15859673
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    |||||||| ||||||||||||||||||||||||| | |||||||    
T  15859630 atatacatcattaattgaatgaatctaaaatatagatttttgct 15859673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 112
Target Start/End: Complemental strand, 31211272 - 31211242
Alignment:
Q  82 atacattattaattgaatgaatctaaaatat 112  Q
    |||||||||||||||||||||||||||||||    
T  31211272 atacattattaattgaatgaatctaaaatat 31211242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 32143482 - 32143528
Alignment:
Q  77 actatatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    ||||||||| | ||||||||||||||| |||||| ||||||||||||    
T  32143482 actatatacttcattaattgaatgaatttaaaatgtaaagttttgct 32143528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 604916 - 604883
Alignment:
Q  82 atacattattaattgaatgaatctaaaatataaa 115  Q
    |||||||||||||||||||||||||||| |||||    
T  604916 atacattattaattgaatgaatctaaaaaataaa 604883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 26269374 - 26269407
Alignment:
Q  82 atacattattaattgaatgaatctaaaatataaa 115  Q
    |||||||||||||| |||||||||||||||||||    
T  26269374 atacattattaattaaatgaatctaaaatataaa 26269407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 31175140 - 31175107
Alignment:
Q  82 atacattattaattgaatgaatctaaaatataaa 115  Q
    |||||| |||||||||||||||||||||||||||    
T  31175140 atacatcattaattgaatgaatctaaaatataaa 31175107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 112
Target Start/End: Original strand, 32218654 - 32218687
Alignment:
Q  79 tatatacattattaattgaatgaatctaaaatat 112  Q
    ||||||||| ||||||||||||||||||||||||    
T  32218654 tatatacatcattaattgaatgaatctaaaatat 32218687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0631 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0631
Description:

Target: scaffold0631; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 123
Target Start/End: Complemental strand, 4408 - 4365
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  4408 atatacgttattaattgaatgaatctaaaatataaagttttgct 4365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 48083583 - 48083626
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  48083583 atatacgttattaattgaatgaatctaaaatataaagttttgct 48083626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 34953975 - 34954018
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    |||||||| ||||||||||||||||||||||||||| |||||||    
T  34953975 atatacatcattaattgaatgaatctaaaatataaatttttgct 34954018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 42761512 - 42761471
Alignment:
Q  82 atacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    |||||| |||||||||||||||||||||| ||||||||||||    
T  42761512 atacatcattaattgaatgaatctaaaatgtaaagttttgct 42761471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 13048719 - 13048675
Alignment:
Q  79 tatatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    ||||||||| |||||||||||||||||||||||| || |||||||    
T  13048719 tatatacatcattaattgaatgaatctaaaatattaatttttgct 13048675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 13053716 - 13053672
Alignment:
Q  79 tatatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    ||||||||| |||||||||||||||||||||||| || |||||||    
T  13053716 tatatacatcattaattgaatgaatctaaaatattaatttttgct 13053672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 6758610 - 6758564
Alignment:
Q  77 actatatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    ||||||||||| ||||||||||||||| ||||||  |||||||||||    
T  6758610 actatatacatcattaattgaatgaatgtaaaatgcaaagttttgct 6758564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 112
Target Start/End: Original strand, 13043418 - 13043451
Alignment:
Q  79 tatatacattattaattgaatgaatctaaaatat 112  Q
    ||||||||| ||||||||||||||||||||||||    
T  13043418 tatatacatcattaattgaatgaatctaaaatat 13043451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 123
Target Start/End: Complemental strand, 24667 - 24624
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    |||||| |||||||||||||||||||||||||||| ||||||||    
T  24667 atatacgttattaattgaatgaatctaaaatataatgttttgct 24624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 123
Target Start/End: Complemental strand, 22752621 - 22752578
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    |||||||||||| ||||||||||||||||||||||| |||||||    
T  22752621 atatacattatttattgaatgaatctaaaatataaatttttgct 22752578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 21886525 - 21886485
Alignment:
Q  83 tacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    ||||| ||||||||||||||||||||||||||| |||||||    
T  21886525 tacatcattaattgaatgaatctaaaatataaatttttgct 21886485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 30138864 - 30138907
Alignment:
Q  77 actatatacattattaattgaatgaatctaaaatataaagtttt 120  Q
    ||||||||||| |||||||||||||||||||||| |||| ||||    
T  30138864 actatatacatcattaattgaatgaatctaaaatgtaaattttt 30138907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 112
Target Start/End: Complemental strand, 33935062 - 33935027
Alignment:
Q  77 actatatacattattaattgaatgaatctaaaatat 112  Q
    ||||||||||||||||| ||||||||||||||||||    
T  33935062 actatatacattattaaatgaatgaatctaaaatat 33935027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 121
Target Start/End: Complemental strand, 37489570 - 37489535
Alignment:
Q  86 attattaattgaatgaatctaaaatataaagttttg 121  Q
    |||||||||||||||||||||||||||||| |||||    
T  37489570 attattaattgaatgaatctaaaatataaatttttg 37489535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 121
Target Start/End: Original strand, 44416613 - 44416652
Alignment:
Q  82 atacattattaattgaatgaatctaaaatataaagttttg 121  Q
    |||||| ||||||||||||||||||||||||||| |||||    
T  44416613 atacataattaattgaatgaatctaaaatataaatttttg 44416652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 4089868 - 4089910
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatataaagttttgc 122  Q
    |||||||| ||||||||||||||| ||||||||||| ||||||    
T  4089868 atatacatcattaattgaatgaatataaaatataaatttttgc 4089910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 9930450 - 9930408
Alignment:
Q  79 tatatacattattaattgaatgaatctaaaatataaagttttg 121  Q
    ||||||||| ||||||| ||||||||||||||||||| |||||    
T  9930450 tatatacataattaattaaatgaatctaaaatataaatttttg 9930408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 644 - 690
Target Start/End: Original strand, 33316147 - 33316193
Alignment:
Q  644 cttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 690  Q
    |||||||||| ||| ||||||| ||||||||| ||||||||||||||    
T  33316147 cttcacttttggtcacttctttaaagtaaactcatatgtaaaattca 33316193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 645 - 690
Target Start/End: Original strand, 2443342 - 2443387
Alignment:
Q  645 ttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 690  Q
    ||||||||| ||||||||||| ||||||||| ||||||| ||||||    
T  2443342 ttcacttttggtctcttctttaaagtaaactcatatgtagaattca 2443387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 2943293 - 2943334
Alignment:
Q  82 atacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    |||||||||||||||||||||| ||||||||||  |||||||    
T  2943293 atacattattaattgaatgaatgtaaaatataattttttgct 2943334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 31813472 - 31813431
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatataaagttttg 121  Q
    |||||||| |||||||||||||||||||||| |||| |||||    
T  31813472 atatacatcattaattgaatgaatctaaaatgtaaatttttg 31813431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 123
Target Start/End: Complemental strand, 3511770 - 3511727
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    |||||||| |||||||||||||||||||||| ||||||||||||    
T  3511770 atatacatcattaattgaatgaatctaaaatgtaaagttttgct 3511727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 38298151 - 38298109
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatataaagttttgc 122  Q
    |||||||| ||||||||||||||||||||||||||| ||||||    
T  38298151 atatacatcattaattgaatgaatctaaaatataaaattttgc 38298109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 10308286 - 10308253
Alignment:
Q  90 ttaattgaatgaatctaaaatataaagttttgct 123  Q
    ||||||||||||||||||||||||||||||||||    
T  10308286 ttaattgaatgaatctaaaatataaagttttgct 10308253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 18423953 - 18423913
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatataaagtttt 120  Q
    |||||||| ||||||||||||||||||||||||||| ||||    
T  18423953 atatacatcattaattgaatgaatctaaaatataaattttt 18423913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 35151737 - 35151781
Alignment:
Q  77 actatatacattattaattgaatgaatctaaaatataaagttttg 121  Q
    ||||||||||| || |||||||||||||||||||| |||||||||    
T  35151737 actatatacatcatcaattgaatgaatctaaaatacaaagttttg 35151781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 639 - 690
Target Start/End: Complemental strand, 13483232 - 13483181
Alignment:
Q  639 ttcaacttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 690  Q
    |||| ||||||||||  |||||||||| ||||||||| ||||||||||||||    
T  13483232 ttcatcttcacttttgatctcttctttaaagtaaactcatatgtaaaattca 13483181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 21142169 - 21142212
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    |||||||| ||||||| ||||||||||||||||||| |||||||    
T  21142169 atatacatcattaattaaatgaatctaaaatataaacttttgct 21142212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 123
Target Start/End: Complemental strand, 35425313 - 35425270
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    |||||||| ||||| |||||||||||||||| ||||||||||||    
T  35425313 atatacatcattaaatgaatgaatctaaaatttaaagttttgct 35425270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 40952427 - 40952470
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    ||||||||  |||||||||||||||||||||||||| |||||||    
T  40952427 atatacatatttaattgaatgaatctaaaatataaatttttgct 40952470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 639 - 690
Target Start/End: Complemental strand, 49649198 - 49649147
Alignment:
Q  639 ttcaacttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 690  Q
    |||| |||||||||| ||||||||||| ||||||||| ||||||| ||||||    
T  49649198 ttcatcttcacttttggtctcttctttaaagtaaactcatatgtataattca 49649147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 639 - 690
Target Start/End: Original strand, 52353833 - 52353884
Alignment:
Q  639 ttcaacttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 690  Q
    |||| ||||| |||||||||||||||| ||||||||| ||||||| ||||||    
T  52353833 ttcatcttcaattttagtctcttctttaaagtaaactcatatgtagaattca 52353884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 644 - 690
Target Start/End: Complemental strand, 2472938 - 2472892
Alignment:
Q  644 cttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 690  Q
    |||||||||| |||||| ||||||||||||||  |||||||||||||    
T  2472938 cttcacttttggtctctccttttaagtaaactagtatgtaaaattca 2472892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 645 - 687
Target Start/End: Complemental strand, 20943664 - 20943622
Alignment:
Q  645 ttcacttttagtctcttcttttaagtaaacttatatgtaaaat 687  Q
    ||||||||||||| || |||| |||||||||||||||||||||    
T  20943664 ttcacttttagtccctcctttaaagtaaacttatatgtaaaat 20943622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 4406322 - 4406363
Alignment:
Q  82 atacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    |||||| |||||||||||||||| |||||||||| |||||||    
T  4406322 atacatcattaattgaatgaatccaaaatataaatttttgct 4406363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 24331484 - 24331451
Alignment:
Q  82 atacattattaattgaatgaatctaaaatataaa 115  Q
    |||||||||||||||||||||||||||| |||||    
T  24331484 atacattattaattgaatgaatctaaaaaataaa 24331451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 36786214 - 36786181
Alignment:
Q  77 actatatacattattaattgaatgaatctaaaat 110  Q
    ||||||||||| ||||||||||||||||||||||    
T  36786214 actatatacatcattaattgaatgaatctaaaat 36786181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 645 - 690
Target Start/End: Original strand, 41534218 - 41534263
Alignment:
Q  645 ttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 690  Q
    |||| |||||||||||||||| ||||||||| |||| |||||||||    
T  41534218 ttcatttttagtctcttctttaaagtaaactaatatataaaattca 41534263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 54508228 - 54508187
Alignment:
Q  82 atacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    |||||| ||| ||||||||||||||||||||||| |||||||    
T  54508228 atacatcatttattgaatgaatctaaaatataaatttttgct 54508187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 10872751 - 10872794
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    |||||||| ||||||||||||||||||||||||||| |||||||    
T  10872751 atatacatcattaattgaatgaatctaaaatataaatttttgct 10872794  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 22497030 - 22497073
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    |||||| |||||||||||||||||||||||| ||||||||||||    
T  22497030 atatacgttattaattgaatgaatctaaaatgtaaagttttgct 22497073  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 24722766 - 24722809
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    |||||||||||||||||| |||||||||||| ||||||||||||    
T  24722766 atatacattattaattgagtgaatctaaaatgtaaagttttgct 24722809  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 3648775 - 3648821
Alignment:
Q  77 actatatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    ||||||||||| ||| ||||||||||| |||||||||||||||||||    
T  3648775 actatatacatcattgattgaatgaatgtaaaatataaagttttgct 3648821  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 35987510 - 35987551
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatataaagttttg 121  Q
    |||||||||||||||||||| ||||||||||||||| |||||    
T  35987510 atatacattattaattgaataaatctaaaatataaaattttg 35987551  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 50466874 - 50466834
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatataaagtttt 120  Q
    |||||||| ||||||||||||||||||||||||||| ||||    
T  50466874 atatacatcattaattgaatgaatctaaaatataaattttt 50466834  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 123
Target Start/End: Complemental strand, 29389388 - 29389345
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    |||||||| |||||||||| |||||||||||||||| |||||||    
T  29389388 atatacatcattaattgaacgaatctaaaatataaatttttgct 29389345  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 123
Target Start/End: Complemental strand, 47334703 - 47334660
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    |||||||| ||||||||||||||| ||||||| |||||||||||    
T  47334703 atatacatcattaattgaatgaatttaaaatacaaagttttgct 47334660  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 123
Target Start/End: Complemental strand, 51060724 - 51060681
Alignment:
Q  80 atatacattattaattgaatgaatctaaaatataaagttttgct 123  Q
    |||||||||||||||||||| |||||||||| |||| |||||||    
T  51060724 atatacattattaattgaattaatctaaaatgtaaatttttgct 51060681  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 110
Target Start/End: Complemental strand, 26243740 - 26243710
Alignment:
Q  80 atatacattattaattgaatgaatctaaaat 110  Q
    |||||||||||||||||||||||||||||||    
T  26243740 atatacattattaattgaatgaatctaaaat 26243710  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 644 - 690
Target Start/End: Complemental strand, 49492079 - 49492033
Alignment:
Q  644 cttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 690  Q
    |||||||||| ||||||||||||||||||||| || |||| ||||||    
T  49492079 cttcacttttggtctcttcttttaagtaaactcatgtgtagaattca 49492033  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 639 - 688
Target Start/End: Complemental strand, 45301236 - 45301187
Alignment:
Q  639 ttcaacttcacttttagtctcttcttttaagtaaacttatatgtaaaatt 688  Q
    |||| |||||||||||||||| ||||| ||||||||| |||| |||||||    
T  45301236 ttcatcttcacttttagtctcatctttaaagtaaactcatatttaaaatt 45301187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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