View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0602-INSERTION-27 (Length: 672)
Name: NF0602-INSERTION-27
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602-INSERTION-27 |
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Alignment Details
Target: chr7 (Bit Score: 565; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 13 - 617
Target Start/End: Original strand, 24908832 - 24909436
Alignment:
| Q |
13 |
agacccgaagctgtaccacggcaaatagtaacccttttttgccaatccagaggaacacatttactttttgaacctgttaaaaaaggaaagtttaactacg |
112 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24908832 |
agacccgaagctgtaccacggcaaataatagcccttttttgccaatccagaggaacacatttactttttgaacctgttaaaaaaggaaagtttaactacg |
24908931 |
T |
|
| Q |
113 |
aagataataactgttttcaaaagtggaaagttttaaatggccatttaatttagataatgatgatataaaagtacaaatcacctaataaagaacttgcgag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24908932 |
aagataataactgttttcaaaagtggaaagttttaaatggccatttaatttagataatgatgatataaaagtacaaatcacctaataaagaacttgtgag |
24909031 |
T |
|
| Q |
213 |
gctattattctcgagaaactcatacaccaatattcgatgattaccctcgatacagaagccgattaatttcacaagatttggatgttgtatattagatatc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24909032 |
gctattattctcgagaaactcatacaccaatattcgatgattaccctcgatacagaagccgattaatttcacaagatttggatgttgtatattagatatc |
24909131 |
T |
|
| Q |
313 |
atagcaatttctgtcataaattcgtgagttccttgtttagactctacagaaagagacttgatagcgacttgcgtaccatcccttaaaacaccctacaaat |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24909132 |
atagcaatttctgtcataaattcgtgagttccttgtttagactctacagaaagagacttgatagcgacttgagtaccatcccttaaaacaccctacaaat |
24909231 |
T |
|
| Q |
413 |
gttaatgacaatgacacaaattaatttcaggtagtaagcactaagaaataagacaaaacaaaagatgaaaaaagcatcggttatgatcctaaccttgtag |
512 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24909232 |
gttaatgacaatgacacaaattaatttcgggtagtaagcactaagaaataagacaaaacaaaagatgaaaaaagcattggttatgatcctaaccttgtag |
24909331 |
T |
|
| Q |
513 |
acaactccataacctcctccaccaattttgcttgaaggatgaaaatctccagtagcagatctcaatgagttatagctaaagcttttagtttccatcactg |
612 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24909332 |
acaactccataccctcctccaccaattttgcatgaaggatgaaaatctcccgtagcagatctcaatgagttatagctaaagcttttagttttcatcactg |
24909431 |
T |
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| Q |
613 |
tcaac |
617 |
Q |
| |
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||||| |
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| T |
24909432 |
tcaac |
24909436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 100 - 616
Target Start/End: Original strand, 24894273 - 24894792
Alignment:
| Q |
100 |
aagtttaactacgaagataataactgttttcaaaagtggaaagttttaaatgg-ccatttaatttagataatgatgatataaaagtacaaatcacctaat |
198 |
Q |
| |
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||||||||||||||||||||||||||||||||||| || |||||||| || || || |||||||||||||||||||||||| |||||||||| |||||| |
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| T |
24894273 |
aagtttaactacgaagataataactgttttcaaaattgaaaagttttgaacgggccttttaatttagataatgatgatatagaagtacaaattacctaac |
24894372 |
T |
|
| Q |
199 |
aaagaacttgcgaggctattattctcgagaaactcatacaccaatattcgatgattaccctcgatacagaagccgattaatttcacaagatttggatgtt |
298 |
Q |
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||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24894373 |
aaagaacttgcaaggctattattcttgagaaactcatacaccaatattcgatgattaccctcgatacagaagccgattagtttcacaagatttggatgtt |
24894472 |
T |
|
| Q |
299 |
gtatattagatatcatagcaatttctgtcataaattcgtgagttccttgtttagactctacagaaagagacttgatagcgacttgcgtaccatcccttaa |
398 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
24894473 |
gtatattagatatcatagcaatttctgtcataaattcatgagttccttgtttcgactctacagaaagtgacttgatagcgacttgagtaccatcccttaa |
24894572 |
T |
|
| Q |
399 |
aacaccctacaaatgttaatgacaatgacacaaattaatttcaggtagtaagcactaagaaataagac-aaaacaaaaga-tgaaaaaagcatcggttat |
496 |
Q |
| |
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||| |||| ||||||||||||||| ||| |||||| |||||| ||| |||||||||||| |||| ||| ||||||||||| |||||||||| |||||| |
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| T |
24894573 |
aactccctgcaaatgttaatgacagtgaaacaaatgaatttcgggtggtaagcactaagcaatatgacaaaaacaaaagacaaaaaaaagcattggttat |
24894672 |
T |
|
| Q |
497 |
gatcctaaccttgtagacaactccataacctcctccaccaattttgcttgaaggatgaaaatctccagtagcagatctcaatgagttatagctaaagctt |
596 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24894673 |
gatcctaaccttgtagacaactccatagcctcctccgccaattttgcatgaaggatgaaaatctccagtagcggatctcaatgagttatagctaaagctt |
24894772 |
T |
|
| Q |
597 |
ttagtttccatcactgtcaa |
616 |
Q |
| |
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||||||| |||||||||||| |
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|
| T |
24894773 |
ttagttttcatcactgtcaa |
24894792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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