View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0602-INSERTION-5 (Length: 554)
Name: NF0602-INSERTION-5
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602-INSERTION-5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 7 - 537
Target Start/End: Original strand, 32667074 - 32667604
Alignment:
| Q |
7 |
aagcatggcactggctggcccttagggtggttgaggttatatggtactagcgtgctattagtgccaagagctattcaatctaattggccctacaatttct |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32667074 |
aagcatggcactggctggcccttagggtggttgaggttatatggtactagggtgctattagtgccaagagctattcaatctaattggccctacaatttct |
32667173 |
T |
|
| Q |
107 |
actggctgaattattcagttgtaattttcgtaggtgacttccttcctccttttctacggggtacggatggtcctacagttggtacgggacagttaggaca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32667174 |
actggctgaattattcagttgtaattttcgtaggtgacttccttcctccttttctacggggtacggatggtcctacagttggtacgggacagttaggaca |
32667273 |
T |
|
| Q |
207 |
gaccaaagtacagatatggtacattatcaaaaatgtcttaagcatacgtgcatgcatctacatttatggtcaagatggttcaggaactttggtagatatg |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
32667274 |
gaccaaagtacagatatggtacattatcaaaaatgtcttaagcatacgtgcatgcatctacatttatggccaagatggttcgggaactttggtagatatg |
32667373 |
T |
|
| Q |
307 |
agattatacaaaacatgtaacagagatctaaaaccaacgtccagctaatgttttgaaaatataaataatgaaatccatgaatttgcaagtcatgaagata |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32667374 |
agattatacaaaacatgtaacagagatctaaaaccaacgtccagctaatgttttgaaaatataaataatgaaatccatgaatttgcaagtcatgaagata |
32667473 |
T |
|
| Q |
407 |
tttcactatctaacacccattatcctcctatcatatcacaaaaccctacacaaaattgagtgtatcaagaacacgtgggaatcataatgtaatatgaatg |
506 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32667474 |
tttcaacatctaacacccattatcctcctatcatatcacaaaaccctacacaaaattgagtgtatcaagaacacgtgggaatcataatgtaatatgaatg |
32667573 |
T |
|
| Q |
507 |
caatggctttgttaccacgtttaattttaaa |
537 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
32667574 |
caatggctttgttaccacgtttaattttaaa |
32667604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1922 times since January 2019
Visitors: 3810