View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0602-INSERTION-6 (Length: 538)

Name: NF0602-INSERTION-6
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0602-INSERTION-6
NF0602-INSERTION-6
[»] chr6 (4 HSPs)
chr6 (251-538)||(33947219-33947503)
chr6 (8-215)||(33947526-33947736)
chr6 (280-359)||(4844156-4844235)
chr6 (263-308)||(24256980-24257024)
[»] chr8 (10 HSPs)
chr8 (282-359)||(216152-216229)
chr8 (282-359)||(692712-692789)
chr8 (282-359)||(696921-696998)
chr8 (282-359)||(729775-729852)
chr8 (282-359)||(853670-853747)
chr8 (282-359)||(220367-220444)
chr8 (282-359)||(689522-689599)
chr8 (282-359)||(733990-734067)
chr8 (282-359)||(857886-857963)
chr8 (264-360)||(22847250-22847345)
[»] chr4 (2 HSPs)
chr4 (263-359)||(49319406-49319502)
chr4 (252-305)||(4153241-4153293)
[»] chr7 (2 HSPs)
chr7 (283-359)||(37410487-37410563)
chr7 (252-359)||(16916470-16916576)
[»] chr2 (2 HSPs)
chr2 (274-349)||(44132560-44132635)
chr2 (282-349)||(45314433-45314500)
[»] chr3 (3 HSPs)
chr3 (263-348)||(31917855-31917938)
chr3 (282-350)||(4045639-4045707)
chr3 (263-354)||(31902193-31902282)
[»] chr1 (4 HSPs)
chr1 (281-334)||(7713043-7713096)
chr1 (252-301)||(12980954-12981003)
chr1 (282-315)||(28343187-28343220)
chr1 (267-311)||(50575962-50576005)


Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 251 - 538
Target Start/End: Complemental strand, 33947503 - 33947219
Alignment:
Q  251 agtcaagtatcatagtggctataatttaccttttttcaaggtgaataagtgaggtatctgaaattctaaccatgacctctgcatgtaacaatgcatgtcc 350  Q
    |||||||||| |||||||||| |||||||||||||| |||||||||||| |||||||||||| |||||||||  ||||||||||||||||||||||||||    
T  33947503 agtcaagtattatagtggctagaatttacctttttt-aaggtgaataagcgaggtatctgaagttctaaccacaacctctgcatgtaacaatgcatgtcc 33947405  T
Q  351 ataccaactatgatatgatcacggaaacannnnnnncatttctttaacaagtgtcctatgcacattaatagttaacattaaattttttatatagagaaag 450  Q
    |||||||||  |||||| |||||||||||       ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |    
T  33947404 ataccaactgagatatgctcacggaaacatttttttcatttctttaacaagtgccctatgcacattaatagttaacattaaattttttatatagaga--g 33947307  T
Q  451 gtttgaaatttactaacttctagactttagatttttagaaagatgtcataaaatgcatgtataatattgaaaggtcaatttccaatgc 538  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33947306 gtttgaaatttactaacttctagactttagatttttaaaaagatgtcataaaatgcatgtataatattgaaaggtcaatttccaatgc 33947219  T

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Target: chr6; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 8 - 215
Target Start/End: Complemental strand, 33947736 - 33947526
Alignment:
Q  8 aattctttgttgtttgtttacagtagcatgaatgatgatgaatctatggtttactttcttaattttattgttatttactgcactcttatatcaagcnnnn 107  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||        
T  33947736 aattctttgttgtttgtttaaagtagcatgaatgatgatgaatctatggtttactttcttaattttattgttatttactgcattcttgtatcaagctttt 33947637  T
Q  108 nnnnnnnnaacattcgttaaagaaccaaatatagtgaaattatctc----ttaaatttgtatagttaataaataatcttttaaaagtgtaaaacacaatc 203  Q
             |||||||||||||||  ||||||||| ||||||||||    ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33947636 ttatttttgacattcgttaaagaattaaatatagtaaaattatctcttaattaaatttgtatagttaat-aataatcttttaaaagtgtaaaacacaatc 33947538  T
Q  204 tattcaatacaa 215  Q
    ||||||||||||    
T  33947537 tattcaatacaa 33947526  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 359
Target Start/End: Complemental strand, 4844235 - 4844156
Alignment:
Q  280 cttttttcaaggtgaataagtgaggtatctgaaattctaaccatgacctctgcatgtaacaatgcatgtccataccaact 359  Q
    |||||||||||||||||||||||||| |||||  ||  ||||  |||| |||||| ||||||||||||||| | ||||||    
T  4844235 cttttttcaaggtgaataagtgaggtgtctgaggtttaaaccccgacccctgcatataacaatgcatgtccctgccaact 4844156  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 308
Target Start/End: Complemental strand, 24257024 - 24256980
Alignment:
Q  263 tagtggctataatttaccttttttcaaggtgaataagtgaggtatc 308  Q
    ||||||||| ||||||| ||||||||||||||||||||| ||||||    
T  24257024 tagtggctagaatttac-ttttttcaaggtgaataagtggggtatc 24256980  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 216152 - 216229
Alignment:
Q  282 tttttcaaggtgaataagtgaggtatctgaaattctaaccatgacctctgcatgtaacaatgcatgtccataccaact 359  Q
    |||||||||||||||||||||||| || |  |||| |||| |||||||||||| |||||||| |||||| | ||||||    
T  216152 tttttcaaggtgaataagtgaggtgtccgtgattcgaaccctgacctctgcatataacaatgtatgtccctgccaact 216229  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 692712 - 692789
Alignment:
Q  282 tttttcaaggtgaataagtgaggtatctgaaattctaaccatgacctctgcatgtaacaatgcatgtccataccaact 359  Q
    |||||||||||||||||||||||| || |  |||| |||| |||||||||||| |||||||| |||||| | ||||||    
T  692712 tttttcaaggtgaataagtgaggtgtccgtgattcgaaccctgacctctgcatataacaatgtatgtccctgccaact 692789  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 696921 - 696998
Alignment:
Q  282 tttttcaaggtgaataagtgaggtatctgaaattctaaccatgacctctgcatgtaacaatgcatgtccataccaact 359  Q
    |||||||||||||||||||||||| || |  |||| |||| |||||||||||| |||||||| |||||| | ||||||    
T  696921 tttttcaaggtgaataagtgaggtgtccgtgattcgaaccctgacctctgcatataacaatgtatgtccctgccaact 696998  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 729775 - 729852
Alignment:
Q  282 tttttcaaggtgaataagtgaggtatctgaaattctaaccatgacctctgcatgtaacaatgcatgtccataccaact 359  Q
    |||||||||||||||||||||||| || |  |||| |||| |||||||||||| |||||||| |||||| | ||||||    
T  729775 tttttcaaggtgaataagtgaggtgtccgtgattcgaaccctgacctctgcatataacaatgtatgtccctgccaact 729852  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 853670 - 853747
Alignment:
Q  282 tttttcaaggtgaataagtgaggtatctgaaattctaaccatgacctctgcatgtaacaatgcatgtccataccaact 359  Q
    |||||||||||||||||||||||| || |  |||| |||| |||||||||||| |||||||| |||||| | ||||||    
T  853670 tttttcaaggtgaataagtgaggtgtccgtgattcgaaccctgacctctgcatataacaatgtatgtccctgccaact 853747  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 220367 - 220444
Alignment:
Q  282 tttttcaaggtgaataagtgaggtatctgaaattctaaccatgacctctgcatgtaacaatgcatgtccataccaact 359  Q
    |||||||||||||||||||| ||| || |  |||| |||| |||||||||||| ||||| ||||||||| | ||||||    
T  220367 tttttcaaggtgaataagtggggtgtccgggattcgaaccctgacctctgcatataacattgcatgtccctgccaact 220444  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 689522 - 689599
Alignment:
Q  282 tttttcaaggtgaataagtgaggtatctgaaattctaaccatgacctctgcatgtaacaatgcatgtccataccaact 359  Q
    |||||||||||||||||||| ||| || |  |||| |||| |||||||||||| ||||| ||||||||| | ||||||    
T  689522 tttttcaaggtgaataagtggggtgtccgggattcgaaccctgacctctgcatataacattgcatgtccctgccaact 689599  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 733990 - 734067
Alignment:
Q  282 tttttcaaggtgaataagtgaggtatctgaaattctaaccatgacctctgcatgtaacaatgcatgtccataccaact 359  Q
    |||||||||||||||||||| ||| || |  |||| |||| |||||||||||| ||||| ||||||||| | ||||||    
T  733990 tttttcaaggtgaataagtggggtgtccgggattcgaaccctgacctctgcatataacattgcatgtccctgccaact 734067  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 857886 - 857963
Alignment:
Q  282 tttttcaaggtgaataagtgaggtatctgaaattctaaccatgacctctgcatgtaacaatgcatgtccataccaact 359  Q
    |||||||||||||||||||| ||| || |  |||| |||| |||||||||||| ||||| ||||||||| | ||||||    
T  857886 tttttcaaggtgaataagtggggtgtccgggattcgaaccctgacctctgcatataacattgcatgtccctgccaact 857963  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 360
Target Start/End: Original strand, 22847250 - 22847345
Alignment:
Q  264 agtggctataatttaccttttttcaaggtgaataagtgaggtatctgaaattctaaccatgacctctgcatgtaacaatgcatgtccataccaacta 360  Q
    |||||||| |||| ||||||||| |||||||||||||||||| | ||   ||| ||||  |||| |||||| ||||||||||||||| | |||||||    
T  22847250 agtggctagaattcacctttttt-aaggtgaataagtgaggtgtgtggggttcgaacctcgacccctgcatataacaatgcatgtccctgccaacta 22847345  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 359
Target Start/End: Complemental strand, 49319502 - 49319406
Alignment:
Q  263 tagtggctataatttaccttttttcaaggtgaataagtgaggtatctgaaattctaaccatgacctctgcatgtaacaatgcatgtccataccaact 359  Q
    |||||||||||||| |||||||||||||||||||||||| ||| || |   ||  ||||  |||| |||||| ||| ||||||||||||| ||||||    
T  49319502 tagtggctataattcaccttttttcaaggtgaataagtggggtgtccggggttggaaccccgacccctgcatataataatgcatgtccatgccaact 49319406  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 252 - 305
Target Start/End: Complemental strand, 4153293 - 4153241
Alignment:
Q  252 gtcaagtatcatagtggctataatttaccttttttcaaggtgaataagtgaggt 305  Q
    |||||||| | |||||||||||||||| |||||| |||||||||||||||||||    
T  4153293 gtcaagtaacctagtggctataatttatcttttt-caaggtgaataagtgaggt 4153241  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 359
Target Start/End: Original strand, 37410487 - 37410563
Alignment:
Q  283 ttttcaaggtgaataagtgaggtatctgaaattctaaccatgacctctgcatgtaacaatgcatgtccataccaact 359  Q
    |||| |||| ||||||||||||| || | | ||| |||| ||||| |||||| ||||||||||||||| ||||||||    
T  37410487 tttttaaggagaataagtgaggtgtccggagttcgaaccttgacccctgcatataacaatgcatgtccttaccaact 37410563  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 359
Target Start/End: Complemental strand, 16916576 - 16916470
Alignment:
Q  252 gtcaagtatcatagtggctataatttaccttttttcaaggtgaataagtgaggtatctgaaattctaaccatgacctctgcatgtaacaatgcatgtcca 351  Q
    |||||||| | ||||||||| |||||| ||||||| ||| |||||||||||||| || ||| ||| ||||  |||| || ||| || ||||||| ||||     
T  16916576 gtcaagtagcttagtggctaaaatttatctttttt-aagctgaataagtgaggtgtccgaagttcgaaccccgacccctacatatagcaatgcaagtccc 16916478  T
Q  352 taccaact 359  Q
    ||||||||    
T  16916477 taccaact 16916470  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 349
Target Start/End: Original strand, 44132560 - 44132635
Alignment:
Q  274 atttaccttttttcaaggtgaataagtgaggtatctgaaattctaaccatgacctctgcatgtaacaatgcatgtc 349  Q
    ||||||||||||||||| |||||||  | ||| |||| | ||| ||||  ||||||||||| ||||||||||||||    
T  44132560 atttaccttttttcaagatgaataaacggggtgtctggagttcgaaccccgacctctgcatataacaatgcatgtc 44132635  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 349
Target Start/End: Complemental strand, 45314500 - 45314433
Alignment:
Q  282 tttttcaaggtgaataagtgaggtatctgaaattctaaccatgacctctgcatgtaacaatgcatgtc 349  Q
    ||||||||| |||||||||| | | |||||| ||| ||||  ||||||||||| ||||||||||||||    
T  45314500 tttttcaagatgaataagtgggatgtctgaagttcgaaccccgacctctgcatataacaatgcatgtc 45314433  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 263 - 348
Target Start/End: Original strand, 31917855 - 31917938
Alignment:
Q  263 tagtggctataatttaccttttttcaaggtgaataagtgaggtatctgaaattctaaccatgacctctgcatgtaacaatgcatgt 348  Q
    ||||||||| |||||||||||||  |||||||||||||| ||| || ||| ||| || |  ||||||| ||| |||||||||||||    
T  31917855 tagtggctaaaatttaccttttt--aaggtgaataagtggggtgtccgaagttcgaagcccgacctctacatataacaatgcatgt 31917938  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 4045639 - 4045707
Alignment:
Q  282 tttttcaaggtgaataagtgaggtatctgaaattctaaccatgacctctgcatgtaacaatgcatgtcc 350  Q
    ||||||||| |||||||||| ||| || ||| ||| ||||  |||| |||||| |||||||||||||||    
T  4045639 tttttcaagatgaataagtggggtgtccgaagttcgaacctcgacccctgcatataacaatgcatgtcc 4045707  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 354
Target Start/End: Original strand, 31902193 - 31902282
Alignment:
Q  263 tagtggctataatttaccttttttcaaggtgaataagtgaggtatctgaaattctaaccatgacctctgcatgtaacaatgcatgtccatac 354  Q
    ||||||||| |||||||||||||  |||||||||||||| ||| || | | ||| ||||  |||| || ||| ||| |||||||||||||||    
T  31902193 tagtggctaaaatttaccttttt--aaggtgaataagtggggtgtccggagttcgaaccccgacccctacatataaaaatgcatgtccatac 31902282  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 7713096 - 7713043
Alignment:
Q  281 ttttttcaaggtgaataagtgaggtatctgaaattctaaccatgacctctgcat 334  Q
    |||||| |||||||||||||||||||||||| |||| |||   |||||||||||    
T  7713096 ttttttaaaggtgaataagtgaggtatctgagattcgaactccgacctctgcat 7713043  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 301
Target Start/End: Original strand, 12980954 - 12981003
Alignment:
Q  252 gtcaagtatcatagtggctataatttaccttttttcaaggtgaataagtg 301  Q
    ||||||| || |||||| || ||||||| |||||||||||||||||||||    
T  12980954 gtcaagtgtcttagtggttagaatttactttttttcaaggtgaataagtg 12981003  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 315
Target Start/End: Original strand, 28343187 - 28343220
Alignment:
Q  282 tttttcaaggtgaataagtgaggtatctgaaatt 315  Q
    ||||| ||||||||||||||||||||||||||||    
T  28343187 ttttttaaggtgaataagtgaggtatctgaaatt 28343220  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 50576005 - 50575962
Alignment:
Q  267 ggctataatttaccttttttcaaggtgaataagtgaggtatctga 311  Q
    |||||||||| ||||||||| |||||||||||||||||| |||||    
T  50576005 ggctataattcacctttttt-aaggtgaataagtgaggtgtctga 50575962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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