View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0602-INSERTION-7 (Length: 486)

Name: NF0602-INSERTION-7
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0602-INSERTION-7
NF0602-INSERTION-7
[»] chr3 (8 HSPs)
chr3 (14-486)||(29821761-29822219)
chr3 (48-99)||(49333873-49333923)
chr3 (23-97)||(54653010-54653085)
chr3 (44-97)||(43102304-43102357)
chr3 (44-99)||(47807849-47807904)
chr3 (10-99)||(33149979-33150069)
chr3 (54-99)||(12992033-12992077)
chr3 (54-99)||(50259425-50259469)
[»] chr6 (2 HSPs)
chr6 (340-486)||(4030605-4030751)
chr6 (7-51)||(24546535-24546579)
[»] chr5 (3 HSPs)
chr5 (100-242)||(40880222-40880364)
chr5 (44-99)||(1663507-1663562)
chr5 (50-99)||(10084988-10085037)
[»] chr8 (4 HSPs)
chr8 (18-97)||(118777-118856)
chr8 (44-99)||(5777111-5777166)
chr8 (54-99)||(45436181-45436225)
chr8 (44-88)||(7487145-7487188)
[»] chr1 (2 HSPs)
chr1 (23-97)||(3978364-3978439)
chr1 (54-99)||(38961773-38961817)
[»] chr7 (3 HSPs)
chr7 (23-99)||(38407199-38407275)
chr7 (44-97)||(19279339-19279392)
chr7 (50-99)||(25154619-25154668)
[»] chr4 (1 HSPs)
chr4 (23-99)||(26791090-26791166)
[»] chr2 (1 HSPs)
chr2 (23-97)||(34039627-34039702)


Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 14 - 486
Target Start/End: Complemental strand, 29822219 - 29821761
Alignment:
Q  14 aacaagaacatttcttcattacaatatcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaacatgataaatgattgt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  29822219 aacaagaacatttcttcattacaatatcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaatatgatagatgattgt 29822120  T
Q  114 tagagaagtagtgattattccaattcgagaagggatgggtctcctaaagaagaaaggaaggccggaagtttttctgaatattttcttcatgattcgataa 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  29822119 tagagaagtagtgattattccaattcgagaagggatgggtctcctaaaaaagaaaggaaggctggaagtttttctgaatattttcttcatgattccataa 29822020  T
Q  214 acgtacaatcattcaaatacatattacatgataactaacttcctagaaaatagcagttactaaactacataattctaaactgcataattatagaaactga 313  Q
    | ||||||||||||||||||||||||||||  ||||||||||||||||||| | ||||||||               |||||||||||||||||||||||    
T  29822019 aagtacaatcattcaaatacatattacatggaaactaacttcctagaaaatggtagttacta---------------aactgcataattatagaaactga 29821935  T
Q  314 ctattgcaattattttaaattataaataaactatttaacatatataattttgatgatgt-caggagctttgataacccgtttctgtccaactaacagtgg 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29821934 ctattgcaattattttaaattataaataaactatttaacatatataattttgatgatgtgcaggagctttgataacccgtttctgtccaactaacagtgg 29821835  T
Q  413 cccaggcgtatcacaattcacagcaacaaccttagcattagaatcttcatcaatcatggtttatctcttccata 486  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29821834 cccaggcggatcacaattcacaacaacaaccttagcattagaatcttcaccaatcatggtttatctcttccata 29821761  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 49333923 - 49333873
Alignment:
Q  48 atcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 99  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  49333923 atcaaccttttcaacaaccacaaacaccc-aatctcaatttcaacaacaaca 49333873  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 54653010 - 54653085
Alignment:
Q  23 atttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 97  Q
    ||||||||||||| || | || ||||| |||||||||||| ||||||||||| | ||| |||||||||||||||||    
T  54653010 atttcttcattaccatcaacaacaacaacaaccttttcaacaaccacaaacatctcaaactcaatttcaacaacaa 54653085  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 43102304 - 43102357
Alignment:
Q  44 caacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 97  Q
    ||||| |||||||||||| |||||||||||  |||||| |||||||||||||||    
T  43102304 caacaacaaccttttcaacaaccacaaacattccaatcccaatttcaacaacaa 43102357  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 47807904 - 47807849
Alignment:
Q  44 caacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 99  Q
    ||||| |||||||||| | ||||||||||| |  ||||||||||||||||||||||    
T  47807904 caacaacaaccttttcgacaaccacaaacatcttaatctcaatttcaacaacaaca 47807849  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 33149979 - 33150069
Alignment:
Q  10 caacaacaagaaca-tttcttcattacaatatcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 99  Q
    ||||||||| |||| ||| || || |||||| || || || |||||||| ||| ||||| ||||||||||||  |||||||||||||||||    
T  33149979 caacaacaacaacaattttttaatcacaataacaacagcagcaacctttgcaagaaccataaacaccccaatggcaatttcaacaacaaca 33150069  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 12992077 - 12992033
Alignment:
Q  54 cttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 99  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||||    
T  12992077 cttttcaacaaccacaaataccc-aatctcaatttcaacaacaaca 12992033  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 50259425 - 50259469
Alignment:
Q  54 cttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 99  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||||    
T  50259425 cttttcaacaaccacaaataccc-aatctcaatttcaacaacaaca 50259469  T

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Target: chr6 (Bit Score: 143; Significance: 6e-75; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 340 - 486
Target Start/End: Complemental strand, 4030751 - 4030605
Alignment:
Q  340 taaactatttaacatatataattttgatgatgtcaggagctttgataacccgtttctgtccaactaacagtggcccaggcgtatcacaattcacagcaac 439  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4030751 taaactatttaacatgtataattttgatgatgtcaggagctttgataacccgtttctgtccaactaacagtggcccaggcgtatcacaattcacagcaac 4030652  T
Q  440 aaccttagcattagaatcttcatcaatcatggtttatctcttccata 486  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  4030651 aaccttagcattagaatcttcatcaatcatggtttatctcttccata 4030605  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 24546579 - 24546535
Alignment:
Q  7 catcaacaacaagaacatttcttcattacaatatcagcaacatca 51  Q
    |||||||||||||||||||||||||| |||||| |||||||||||    
T  24546579 catcaacaacaagaacatttcttcatcacaataccagcaacatca 24546535  T

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Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 100 - 242
Target Start/End: Original strand, 40880222 - 40880364
Alignment:
Q  100 tgataaatgattgttagagaagtagtgattattccaattcgagaagggatgggtctcctaaagaagaaaggaaggccggaagtttttctgaatattttct 199  Q
    ||||| |||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| | |||||||| ||||||||||||    
T  40880222 tgatagatgattgttaaagaagtagtgattatcccaattcgagaagggatgagtctcctaaagaagaaaggaaggctgtaagtttttatgaatattttct 40880321  T
Q  200 tcatgattcgataaacgtacaatcattcaaatacatattacat 242  Q
    | ||||||| | ||||||||||||||||||||||| |||||||    
T  40880322 taatgattcaacaaacgtacaatcattcaaatacacattacat 40880364  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 1663507 - 1663562
Alignment:
Q  44 caacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 99  Q
    ||||| |||| ||||||| ||||||||||| | |||||||||||||||||||||||    
T  1663507 caacaacaactttttcaacaaccacaaacatctcaatctcaatttcaacaacaaca 1663562  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 10084988 - 10085037
Alignment:
Q  50 caaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 99  Q
    |||||||||||| |||||| ||||  ||||||||||||||||||||||||    
T  10084988 caaccttttcaacaaccacgaacattccaatctcaatttcaacaacaaca 10085037  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 118856 - 118777
Alignment:
Q  18 agaacatttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 97  Q
    |||| |||||||||| ||||| | || ||||||||||||||||| || ||| ||||||||||||||||||||||| |||||    
T  118856 agaaaatttcttcatcacaattagcaacaacatcaaccttttcataa-ccataaacaccccaatctcaatttcaataacaa 118777  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 5777166 - 5777111
Alignment:
Q  44 caacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 99  Q
    ||||| |||||||||||| || | |||||| ||||||||||||| |||||||||||    
T  5777166 caacaacaaccttttcaacaatctcaaacaacccaatctcaattccaacaacaaca 5777111  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 45436225 - 45436181
Alignment:
Q  54 cttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 99  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||||    
T  45436225 cttttcaacaaccacaaataccc-aatctcaatttcaacaacaaca 45436181  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 7487188 - 7487145
Alignment:
Q  44 caacatcaaccttttcaaaaaccacaaacaccccaatctcaattt 88  Q
    ||||||||||||||||| || ||| ||||||||||||||||||||    
T  7487188 caacatcaaccttttcataa-ccataaacaccccaatctcaattt 7487145  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 3978364 - 3978439
Alignment:
Q  23 atttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 97  Q
    ||||||||||||| || | || ||||| |||||||||||| ||||||||||| | ||| |||||||||||||||||    
T  3978364 atttcttcattaccatcaacaacaacaacaaccttttcaacaaccacaaacatctcaaactcaatttcaacaacaa 3978439  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 38961817 - 38961773
Alignment:
Q  54 cttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 99  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||||    
T  38961817 cttttcaacaaccacaaataccc-aatctcaatttcaacaacaaca 38961773  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 38407275 - 38407199
Alignment:
Q  23 atttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 99  Q
    |||||||||| ||||| | || ||||||||||||||||| || ||| || ||||| ||||||||||||||||||||||    
T  38407275 atttcttcatcacaattagcaacaacatcaaccttttcataa-ccataatcaccctaatctcaatttcaacaacaaca 38407199  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 19279392 - 19279339
Alignment:
Q  44 caacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 97  Q
    ||||| |||||||||||| ||||||||||| | ||| |||||||| ||||||||    
T  19279392 caacaacaaccttttcaacaaccacaaacatctcaaactcaattttaacaacaa 19279339  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 25154668 - 25154619
Alignment:
Q  50 caaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 99  Q
    |||| ||||||| |||||||||||| |||||||||| | |||||||||||    
T  25154668 caactttttcaacaaccacaaacactccaatctcaaatccaacaacaaca 25154619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 26791166 - 26791090
Alignment:
Q  23 atttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 99  Q
    ||||||||||||| || | || ||||| |||||||||||| ||||||||||| ||| ||||||||||||||| |||||    
T  26791166 atttcttcattaccatgaacaacaacaacaaccttttcaacaaccacaaacatccc-atctcaatttcaacagcaaca 26791090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 34039627 - 34039702
Alignment:
Q  23 atttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 97  Q
    ||||||||||||| || | || ||||| |||||||||||| ||||||||| |  |||||| |||||||||||||||    
T  34039627 atttcttcattaccatcaacaacaacaacaaccttttcaacaaccacaaatattccaatcccaatttcaacaacaa 34039702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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