View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0602-INSERTION-8 (Length: 638)
Name: NF0602-INSERTION-8
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602-INSERTION-8 |
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Alignment Details
Target: chr1 (Bit Score: 618; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 8 - 637
Target Start/End: Original strand, 16684915 - 16685544
Alignment:
| Q |
8 |
ctaaccatgtgcaaaatcacctgaaaaaccctcttctcgtcaccgataacatagttaggcaaagacctatcgacctcaaccttaaatccaaaacccttac |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
16684915 |
ctaaccatgtgcaaaatcacctgaaaaaccctcttctcgtcaccgataacatagttaggcaaagacctatcaacctcaaccttaaatccaaaacccttac |
16685014 |
T |
|
| Q |
108 |
ataaagccatagacttggcaatgcaagctgcttcttttaacatgttatgtaaaccaaaacatttcatctccaaaggaaatcttccacctcgaccgtccct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16685015 |
ataaagccatagacttggcaatgcaagctgcttcttttaacatgttatgtaaaccaaaacatttcatctccaaaggaaatcttccacctcgaccgtccct |
16685114 |
T |
|
| Q |
208 |
atctgaattgtccatagcatcattcatcaagttcgatacgacgccgcttgtccttaccatcgaatccacaataagtttttgttcactcttcaaattctca |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16685115 |
atctgaattgtccatagcatcattcatcaagttcgatacgacgccgcttgtccttaccatcgaatccacaataagtttctgttcactcttcaaattctca |
16685214 |
T |
|
| Q |
308 |
tcttgcatcattgaaagcaatcccataactgaatgcattggccttcccattccattactcatgactttctgaaaaactgctctagcctcgctcgccatca |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16685215 |
tcttgcatcattgaaagcaatcccataactgaatgcattggccttcccattccattactcatgactttctgaaaaactgctctagcctcgctcgccatca |
16685314 |
T |
|
| Q |
408 |
tagcgttccttttctcttgttgcaatgctcgatttcgctcctccaatttctctctcataagttgtgattcttcgagaatcgcggcatgagaaagacccac |
507 |
Q |
| |
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| T |
16685315 |
tagcgttccttttctcttgttgcaatgctcgatttcgctcctccaatttctctctcataagttgtgattcttcgagaatcgcggcatgagaaagacccac |
16685414 |
T |
|
| Q |
508 |
ggctacctgatcagcaacaactttaataatctcaagctcttgattgctccaagatctagcctcttcactaggaagtaccaaaacaagtattgcgtaacag |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16685415 |
ggctacctgatcagcaacaactttaataatctcaagctcttgattgctccaagatctagcctcttcactaggaagtaccaaaacaagtattgcgtaacag |
16685514 |
T |
|
| Q |
608 |
gcttctgttacctcaggcgtcccacctttg |
637 |
Q |
| |
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||||| |||||||||||||||||||||||| |
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| T |
16685515 |
gcttccgttacctcaggcgtcccacctttg |
16685544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 10 - 566
Target Start/End: Complemental strand, 32790168 - 32789618
Alignment:
| Q |
10 |
aaccatgtgcaaaatcacctgaaaaaccctcttctcgtcaccgataacatagttaggcaaagacctatcgacctcaaccttaaatccaaaacccttacat |
109 |
Q |
| |
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|||||| |||||||||||||||||||||||| |||| ||||| ||||||| ||| || |||||| |||| ||||||||| |||| || || |||||| | |
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| T |
32790168 |
aaccatatgcaaaatcacctgaaaaaccctcctctcatcacccataacatggtttggtaaagacttatcaacctcaaccataaaacccaagcccttataa |
32790069 |
T |
|
| Q |
110 |
aaagccatagacttggcaatgcaagctgcttcttttaacatgttatgtaaaccaaaacatttcatctccaaaggaaatcttccacctcgaccgtccctat |
209 |
Q |
| |
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| | ||| | ||||||| ||| ||||||||||||| |||| |||||| |||||| | | ||||||||||||||||||||| | ||| | |
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| T |
32790068 |
acacacatgcatttggcaaggcacgctgcttcttttatcatggaatgtaacccaaaagaccttatctccaaaggaaatcttccatca------tcctttg |
32789975 |
T |
|
| Q |
210 |
ctgaattgtccatagcatcattcatcaagttcgatacgacgccgcttgtccttaccatcgaatccacaataagtttttgttcactcttcaaattctcatc |
309 |
Q |
| |
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| || ||||||| |||||||| |||||||| |||| ||| ||| ||| ||| ||| | |||||||||||| || |||||| |||| ||||| || || |
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| T |
32789974 |
cagagctgtccatggcatcatttatcaagtttgataggacattgctcgtctttaacattgcatccacaataagcttctgttcattctttaaattatcgtc |
32789875 |
T |
|
| Q |
310 |
ttgcatcattgaaagcaatcccataactgaatgcattggccttcccattccattactcatgactttctgaaaaactgctctagcctcgctcgccatcata |
409 |
Q |
| |
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||| ||||||||||||||||||| || || ||||| ||||| | ||| |||| |||||||||||||||||| ||| |||| ||| ||||||||| |
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| T |
32789874 |
ttgtatcattgaaagcaatcccaaaatcgagtgcataggcctcctcataccatcactcatgactttctgaaatgagtttcttgcctggcttgccatcata |
32789775 |
T |
|
| Q |
410 |
gcgttccttttctcttgttgcaatgctcgatttcgctcctccaatttctctctcataagttgtgattcttcgagaatcgcggcatgagaaagacccacgg |
509 |
Q |
| |
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|| |||||| || | ||||||| |||||||| || || ||||| ||||||||||| ||||| || ||||| ||||| || ||||| || ||| |||||| |
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| T |
32789774 |
gcattccttctcgccagttgcaaagctcgattgcgttcttccaacttctctctcatgagttgagactcttcaagaattgcagcatgtgatagagccacgg |
32789675 |
T |
|
| Q |
510 |
ctacctgatcagcaacaactttaataatctcaagctcttgattgctccaagatctag |
566 |
Q |
| |
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| T |
32789674 |
cgacctgatcagcaaccaccttaattatctccagctcctgattgctccaagatctag |
32789618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 522
Target Start/End: Complemental strand, 35451245 - 35451148
Alignment:
| Q |
425 |
tgttgcaatgctcgatttcgctcctccaatttctctctcataagttgtgattcttcgagaatcgcggcatgagaaagacccacggctacctgatcagc |
522 |
Q |
| |
|
|||||||||||||| ||| |||| || | |||||||||||| | || || |||||||||| || ||||||||||| | ||||| ||||||||||| |
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| T |
35451245 |
tgttgcaatgctcggttttgctcttcgagtttctctctcattaaatgagactcttcgagaaccgatgcatgagaaagggctacggccacctgatcagc |
35451148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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