View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0602-INSERTION-9 (Length: 1121)
Name: NF0602-INSERTION-9
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602-INSERTION-9 |
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Alignment Details
Target: chr6 (Bit Score: 761; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 761; E-Value: 0
Query Start/End: Original strand, 20 - 922
Target Start/End: Complemental strand, 9571625 - 9570722
Alignment:
| Q |
20 |
tggtttagggatgcacttagttaggcaagcttgttttgggaaatttttctttcgagtaacaaattataggtgaaaatgtttcaagaaagatacaaatgaa |
119 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9571625 |
tggtttagggatgcacttagttaggcaagtttgttttgggaaatttttcttttgagtaacaaattatgggtgaaaatgtttcaagaaagatacaaatgaa |
9571526 |
T |
|
| Q |
120 |
gactatgttcaatgtgtttttaagtggatgatcaatcatttggaaatctatatttaaagcgttacataaaccacaagatggttttattttcaaaatcgat |
219 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9571525 |
gactatgttcaatgtgtttctaagtggatgatcaatcatttagaaatctatatttaaagcattacataaaccacaagatggttttattttcaaaatcgat |
9571426 |
T |
|
| Q |
220 |
gagtaactctaatttttatatgatccttggctctttaaatttttgttgttgttcatgacactgctttgaaattagtggtttaatggtgtatgccatttaa |
319 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
9571425 |
gagtaactctaatttttatatgatccttgggtctttaaatttttgttgttgttcatgacactgctttaaaattagtggtttaatggtgtatgtcatttaa |
9571326 |
T |
|
| Q |
320 |
atttgttatacaccaagaaatcgtccccacgagggttgcttttgtctaagtgttgatggtaggtagttaggttcgactaatcaagcagattttggtggtt |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
9571325 |
atttgttatacaccaagaaatcgtccccacgagggctgcttttgtctaagtgttgatggtaggtagttaggttcgagtaatcaagctgattttggtggtt |
9571226 |
T |
|
| Q |
420 |
tactcataatgacggcaagtttcttttagggtcatgcggatctatgggtgttgctagcatccttcgtggagattatgattaatttttgttgttgctctct |
519 |
Q |
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|||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9571225 |
tactcataatgatggcaagtttcttttggggtcatgtggatctatgggtgttgctagcatccttcgtgaagattatgattaatttttgttgttgctctct |
9571126 |
T |
|
| Q |
520 |
aacccgctctttgccttctctctaaccctcagatccaccacccttcctcaccctcagattatgttttcgcggccatcc-nnnnnnnttaagttgatcgca |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| | || |
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| T |
9571125 |
aacccgctctttgccttctctctaaccctcagatccaccacccttcctcaccctcagattatgttttcgcggtcatccaaaaaaaattaagttgaccaca |
9571026 |
T |
|
| Q |
619 |
aaagttttaatccgaaccatcaaaatacttaattgccacgtggcaaacatcttctaaaggaactggattaaatgtaggagaagggaaatgaagcagattt |
718 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9571025 |
aaagttttaatccgaaccatcaaaatacttaattgccacgtggcaaacatcttctaaaggaactggattaaatgtaggagaagggaaatgaagcagattt |
9570926 |
T |
|
| Q |
719 |
ggactctatctgcaatgtgtctttttctttagggcaaagttgttgagccaatgtgtgcacaagattgagttatatt-ccattaattaaaaaacaaaaggt |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9570925 |
ggactctatctgcaatgtgtctttttctttagggcaaagttgctgagccaatgtgtgcacaagattgagttatattcccattaattaaaaaacaaaaggc |
9570826 |
T |
|
| Q |
818 |
tatacaatttaagccatttattcaaatcataagttacaatcaaataaat-aaagtattatatcattgatttaacaaacacctatcaacttcaggaagatt |
916 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
9570825 |
tatacaatttaagccatttattcaaatcataagttacaatcaaataaataaaagtattatatcattgatttaacaaaca-ctatcaac-tcaggaagatt |
9570728 |
T |
|
| Q |
917 |
atcaag |
922 |
Q |
| |
|
|||||| |
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|
| T |
9570727 |
atcaag |
9570722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 49 - 199
Target Start/End: Complemental strand, 9575727 - 9575573
Alignment:
| Q |
49 |
cttgttttgggaaatttttctttcgagtaacaaattataggtgaaaatgtttcaagaaagatac---aaatgaagactat-gttcaatgtgtttttaagt |
144 |
Q |
| |
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|||||||||| ||| | ||| || | || ||||||| | ||||||||||||| ||||||||||| ||| ||||| ||| ||||||||||| | ||||| |
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| T |
9575727 |
cttgttttggaaaaatcttcattggcgtcacaaattgtgggtgaaaatgtttgaagaaagatacctaaaaggaagattattgttcaatgtgtctgtaagt |
9575628 |
T |
|
| Q |
145 |
ggatgatcaatcatttggaaatctatatttaaagcgttacataaaccacaagatg |
199 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| ||||||||||||| ||||| |
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|
| T |
9575627 |
ggatgatcagacatttggaaatctatatctaaagcattacataaaccacgagatg |
9575573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 514 - 574
Target Start/End: Original strand, 24316008 - 24316066
Alignment:
| Q |
514 |
ctctctaacccgctctttgccttctctctaaccctcagatccaccacccttcctcaccctc |
574 |
Q |
| |
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|||||||||||||| |||| ||||||||||| ||||||||| || ||||||||||||||| |
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| T |
24316008 |
ctctctaacccgct--ttgctttctctctaacactcagatccgccgcccttcctcaccctc |
24316066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 185
Target Start/End: Complemental strand, 12651597 - 12651486
Alignment:
| Q |
78 |
acaaattataggtgaaaatgtttcaagaaagatac---aaatgaagactat-gttcaatgtgtttttaagtggatgatcaatcatttggaaatctatatt |
173 |
Q |
| |
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||||||| | ||||||||||||| |||||||||| ||| ||||||||| |||||||||||| ||| |||| ||| |||||||| |||||||||| |
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| T |
12651597 |
acaaattgtgggtgaaaatgtttgaagaaagatatgtgaaaggaagactattgttcaatgtgttcgtaactggagaatcgatcatttgtaaatctatatc |
12651498 |
T |
|
| Q |
174 |
taaagcgttaca |
185 |
Q |
| |
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||||||||||| |
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|
| T |
12651497 |
aaaagcgttaca |
12651486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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