View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0602-Insertion-19 (Length: 885)
Name: NF0602-Insertion-19
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602-Insertion-19 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 727; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 727; E-Value: 0
Query Start/End: Original strand, 7 - 885
Target Start/End: Complemental strand, 6881904 - 6881012
Alignment:
| Q |
7 |
attatatagattacttattaagtctttcgaccaaaaaagattacttattaagcaaagcactacaatgcatgaaagataatgtgcaagctttggataactg |
106 |
Q |
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| T |
6881904 |
attatatagattacttattaagtctttcgaccaaaaaagattacttattaagcaaagcactacaatgcatgaaagataatgtgcaagctttggataactg |
6881805 |
T |
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| Q |
107 |
gctcattttaatgcaagataggatttctccagaaaatgcaagatacatttcttatagccttgccattgtgctaggcaatgcattaatgtaagtcatgatc |
206 |
Q |
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| T |
6881804 |
gctcattttaatgcaagataggatttctccagaaaatgcaagatacatttcttatagccttgccattgtgctaggcaatgcattaatgtaagccatgatc |
6881705 |
T |
|
| Q |
207 |
ttataattagattgagtttgagaagaaattatgtggttggcttaaatgtattggctaaatttgacaacaaatcttaatatgtattcagtatccaaatcaa |
306 |
Q |
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| T |
6881704 |
ttataattagattgagtttgagaagaaattatgtggttggcttaaatgtattggctaaatttgacaacaaatcttaatatgtattcagtatccaaatcaa |
6881605 |
T |
|
| Q |
307 |
tgatag-catatagactatggttgccttaaagttgatagtaaacttgttcaattctgatgtgcaattcagtactgagaattcaggttcaactgtaaccga |
405 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6881604 |
tgatagacatatagactatggttgccttaaagttgatagtaaacttgttcaattctgatgtgcaattcagtactgagaattcaggttcaaccgtaaccga |
6881505 |
T |
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| Q |
406 |
atcctgtatttaccaaactgacatataaacaatctctctttattctactctgctcataatctcttttactcaagaatactatggagaattctctgtggca |
505 |
Q |
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| T |
6881504 |
attctgtatttaccaaactgacatataaacaatctctctttattctactctgctcataatctcttttactcaagaatactatggagaattctctgtggca |
6881405 |
T |
|
| Q |
506 |
gcnnnnnnnnnnnnnnnntcattt-cacaattgcaatgactgaattgacaatgagaacaaaccgaaaatctaactaagcatacaaacaggtcacaaaaat |
604 |
Q |
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| T |
6881404 |
gcaaaataaaaataaaaatcatttccacaattgcaatgactgaattgacaatgagaacaaaccgaaaatctaactaagcatacaaacagttcacaaaaat |
6881305 |
T |
|
| Q |
605 |
tgtaaatgtgcctccatcgttaagagaactaggaaatatctctgtcctggtactcaaatcctcttaatatttaattaattaaattcattaatagtgcaaa |
704 |
Q |
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| T |
6881304 |
tgtaaatgtgcctccatcattaagagaactaggaaatatctccgtcctggtactcaaatcctcttaatatttaattaattaaattcattaatagtgcaaa |
6881205 |
T |
|
| Q |
705 |
aagttaaaaggattatggttgcttgctccaacaaactagtgtctactttcaaaaacc-tttttttata-----------ttcacnnnnnnnnctttatta |
792 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||| |
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| T |
6881204 |
aagttaaaagaattatggttgcttgctccaacaaactagtgtctactttcaaaaaccttttttttatattcacttttctttcacttttttttctttatta |
6881105 |
T |
|
| Q |
793 |
ttggcattattttgaaaatgatctatttcttcaagcttcaaaaaggttttatccaaaatttattttctccatcagaaggtttttctttctcgt |
885 |
Q |
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| T |
6881104 |
ttggcgttattttgaaaatgatctatttcttcaagcttcaaaaaggttttatccaaaatttattttctccatcagaaggtttttctttctcgt |
6881012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 642 - 883
Target Start/End: Complemental strand, 35458386 - 35458146
Alignment:
| Q |
642 |
atctctgtcctggtactcaaatcctcttaatatttaattaattaaattcattaatagtgca-aaaagttaaaaggattatggttgct---tgctccaaca |
737 |
Q |
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| T |
35458386 |
atctccgtcctggtactcaaatcctcttaatatttaattaattaaattcattaatagtgcaaaaaaattaaaaggattatagttgctcgctgctgcaaca |
35458287 |
T |
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| Q |
738 |
aactagtgtctactttcaaaaacctttttttatattcacnnnnnnnnctttattattggcattattttgaaaatga---tctatttcttcaagcttcaaa |
834 |
Q |
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|||| ||||||| |||||||||||||||||||||||||| ||| ||| | || |||||||| |||||| ||||||||||||||||||||| |
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| T |
35458286 |
aactggtgtctattttcaaaaacctttttttatattcact--------ttttttaatagcgttattttgcaaatgatgttctatttcttcaagcttcaaa |
35458195 |
T |
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| Q |
835 |
aaggttttatccaaaatttattttctccatcagaaggtttttctttctc |
883 |
Q |
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| T |
35458194 |
aaggttttctgcgaaatttattttctccgttagagggtttttctttctc |
35458146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 560 - 610
Target Start/End: Complemental strand, 6845765 - 6845715
Alignment:
| Q |
560 |
aacaaaccgaaaatctaactaagcatacaaacaggtcacaaaaattgtaaa |
610 |
Q |
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| T |
6845765 |
aacaaactgaaaacctaactaagcatacaaacagttcacgaagattgtaaa |
6845715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 818 - 883
Target Start/End: Original strand, 3180694 - 3180758
Alignment:
| Q |
818 |
tttcttcaagcttcaaaaaggttttatccaaaatttattttctccatcagaaggtttttctttctc |
883 |
Q |
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||||| |||| |||||| ||||||| | |||||||||||||||||||| ||||||||| ||||||| |
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| T |
3180694 |
tttctccaagattcaaagaggttttttgcaaaatttattttctccatc-gaaggttttcctttctc |
3180758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 664 - 706
Target Start/End: Original strand, 3180543 - 3180585
Alignment:
| Q |
664 |
cctcttaatatttaattaattaaattcattaatagtgcaaaaa |
706 |
Q |
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| T |
3180543 |
cctctaaatatttaattaaattaattcattaatagtgcaaaaa |
3180585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 720
Target Start/End: Complemental strand, 24214586 - 24214521
Alignment:
| Q |
655 |
tactcaaatcctcttaatatttaattaattaaattcattaatagtgcaaaaagttaaaaggattat |
720 |
Q |
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|||||||| ||||||||||||||||| ||| ||| || ||||||||||||| ||||| |||||| |
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| T |
24214586 |
tactcaaaatctcttaatatttaattagttatattaatcaatagtgcaaaaaagtaaaaagattat |
24214521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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