View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0602-Insertion-2 (Length: 686)
Name: NF0602-Insertion-2
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 401
Target Start/End: Complemental strand, 45681309 - 45680917
Alignment:
| Q |
8 |
agaattttagaagcatctttctaatgagaatttaaatataattccaacgtccaattgaatgtccgaattaggacataacttaactccccggaagctcata |
107 |
Q |
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| T |
45681309 |
agaattttagaagcatctttctaatgagaatttaaatataattccaacgtccaattggatgtctgaattaggacataacttaagtccccggaagctcata |
45681210 |
T |
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| Q |
108 |
atgtcagaacaaacaggcaatcaaagnnnnnnntatttcaatagtatataaatttaatataatatttttaacnnnnnnnnnnnggtgttatatattgaga |
207 |
Q |
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| T |
45681209 |
atgtcagaacaaacaggcaatcaaagaaaa---tatttcaatagtatataaatttaatataatatttttaacaaaaaaaaaa--gtgttatatattgaga |
45681115 |
T |
|
| Q |
208 |
ggagagaagatactttgagtttagaacatgttaatgaaaaaacaaagcacttggagacaaattactattttggcagtttctgtgtcatgaataactcgca |
307 |
Q |
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| T |
45681114 |
cgagagaagatactttgagtttagaacatgttaatgaaaaaacaaagcacttggagacaaattactattttggcagtttctgtgtcatgaataactcgca |
45681015 |
T |
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| Q |
308 |
gggaatattgtacaatttgtgccatctcagaaagacaaatgaaaagtttaatttaatayg----catccagtgtcccattaattacttctattccaag |
401 |
Q |
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| T |
45681014 |
gggaatattgtacaatttgtgccatctcagaaagacaaatgaaaagtttaatttaatatgcatccatccagtgtcccattaattacttctattccaag |
45680917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 501 - 686
Target Start/End: Complemental strand, 45680817 - 45680636
Alignment:
| Q |
501 |
ctccaacgaaacaataatgattgttttacaataattttcaagggaaattgaaatatgtcctttgaaatcatgcaatgtcaaaccaaacttaccactaagc |
600 |
Q |
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| T |
45680817 |
ctccaacgaaacaataatgattgttttacaataattttcaagggaaattgaaatatgtcctttgaaatcatgcaatgtcaaaccaaacttaccactaagc |
45680718 |
T |
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| Q |
601 |
tgaattaattagcttagacaattattgttaaattttatattgttgttgtttaaaattattgaagccaatgtctataaatcaccggt |
686 |
Q |
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| T |
45680717 |
tga----attagcttagacaattattgttaaattttatattgttgttgtttaaaattattgaagccaatgtctataaatgaccggt |
45680636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 282
Target Start/End: Original strand, 1268022 - 1268051
Alignment:
| Q |
253 |
agcacttggagacaaattactattttggca |
282 |
Q |
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| T |
1268022 |
agcacttggagacaaattactattttggca |
1268051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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