View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0602-Insertion-25 (Length: 728)
Name: NF0602-Insertion-25
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602-Insertion-25 |
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| [»] chr8 (10 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 564; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 8 - 728
Target Start/End: Complemental strand, 13895175 - 13894463
Alignment:
| Q |
8 |
gttgatttgttggagaagcttgtggtgaagttgttttatgattcatcacttcctcatcattggcttgcaggtaattttgcacctgttaaggatgagacac |
107 |
Q |
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| T |
13895175 |
gttgatttgttggagaagcttgtggtgaagttgttttatgattcatcacttcctcatcattggcttgccggtaattttgcacctgttaaggatgagacac |
13895076 |
T |
|
| Q |
108 |
ctcctactaaggaccttcctgttaaaggttaccttccggtaagtgaaaatgagttgtaacacatttttatatttgtggttaatgacgttgaaaaccgcgt |
207 |
Q |
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| T |
13895075 |
ctcctactaaggaccttcctgttaaaggctaccttccggtaagtgaaaatgagttgtaacacatttttatat--gtggttaatgacgttgaaaaccgcgt |
13894978 |
T |
|
| Q |
208 |
tgagtgatctgttggctttttactttctgtcctcgaaatttcaacattggtacttactcacatgttgagtatggaaggctcatagttaccgataagtgcg |
307 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| ||||| || |||||||||||||||||||||||| |
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| T |
13894977 |
tgagtgatctgttggctttttactttctgt-----------------tggtacttactcacatgtagagtacggcgggctcatagttaccgataagtgcg |
13894895 |
T |
|
| Q |
308 |
cagcggtaatgttgagtattgcttttctaacataacattttcctgcaatacactaaccattagaacaatatcaggtcctatcactcatcactaaccattt |
407 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13894894 |
caggggtaatgttgagtattgcttttctaacataacattttcctgcaatacactaactattagaacaatatcaggtcctatcactcatcactaaccattt |
13894795 |
T |
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| Q |
408 |
gaagtcttttgtaggattgcttgaatggagagtttgtcagggtgggacctaatccgaagttttctcctgtcgctggatatcattggtgaactttttcttg |
507 |
Q |
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| T |
13894794 |
gaagtctattgtaggattgcttgaatggagagtttgtcagggtgggacctaatccgaagttttctcctgtcgctggatatcattggtgaactttttcttg |
13894695 |
T |
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| Q |
508 |
tc-----------nnnnnnnnnatcttgtctggtttcaatttcaacagtatatcacgagaacttgcatttgcttatcagtacattgactttcatttctat |
596 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13894694 |
tcttttttttttatttttttttatcttgtctggtttcaatttcaacagtatatcacgagaacttgcatttgcttatcagtacattgactttcatttctat |
13894595 |
T |
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| Q |
597 |
ttttgcaggtttgatggagatgggtgcgtgcgcgattctcttcctttatgaaaatacatatattgctttcaagtttgttgttaatgaaaaaatatttgat |
696 |
Q |
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| T |
13894594 |
ttttgcaggtttgatggagatgggtgcgtgcgcgattctcttcctttatgaaaatacatatattgctttcaagtttgttgttaatgaaaaaatatttgat |
13894495 |
T |
|
| Q |
697 |
ttttacagtttcccccttctctttttcctttc |
728 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
13894494 |
ttttacagtttcccccttctctttttcctttc |
13894463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 367 - 509
Target Start/End: Complemental strand, 13872383 - 13872241
Alignment:
| Q |
367 |
ttagaacaatatcaggtcctatcactcatcactaaccatttgaagtcttttgtaggattgcttgaatggagagtttgtcagggtgggacctaatccgaag |
466 |
Q |
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| T |
13872383 |
ttagaacaatatcaggtcctgtcactcatcactaaccatttgaagtctattgcaggattgcttgaatggagagtttgttagggtgggacctaatccgaag |
13872284 |
T |
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| Q |
467 |
ttttctcctgtcgctggatatcattggtgaactttttcttgtc |
509 |
Q |
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| T |
13872283 |
ttttctcccgttgctggatatcattggtaaactttttcttgtc |
13872241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 367 - 509
Target Start/End: Complemental strand, 13853484 - 13853342
Alignment:
| Q |
367 |
ttagaacaatatcaggtcctatcactcatcactaaccatttgaagtcttttgtaggattgcttgaatggagagtttgtcagggtgggacctaatccgaag |
466 |
Q |
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| T |
13853484 |
ttagaacaatatcaggtcctgtcactcatcactaaccatttgaagtctattgcaggattgcttgaatggagagtttgttagggtgggacctaatccgaag |
13853385 |
T |
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| Q |
467 |
ttttctcctgtcgctggatatcattggtgaactttttcttgtc |
509 |
Q |
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| T |
13853384 |
ttttctcccgttgctggatatcattggtaaactttgtcttgtc |
13853342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 8 - 153
Target Start/End: Complemental strand, 13902940 - 13902795
Alignment:
| Q |
8 |
gttgatttgttggagaagcttgtggtgaagttgttttatgattcatcacttcctcatcattggcttgcaggtaattttgcacctgttaaggatgagacac |
107 |
Q |
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|||||||| ||||||||| || | |||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
13902940 |
gttgatttattggagaagattattgtgaagttgttttatgattcttcgcttcctcatcattggcttgctggtaattttgcacctgttaaggatgaaacac |
13902841 |
T |
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| Q |
108 |
ctcctactaaggaccttcctgttaaaggttaccttccggtaagtga |
153 |
Q |
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| T |
13902840 |
ctcctattaaggatcttcctattaaaggacaccttccggttagtga |
13902795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 8 - 153
Target Start/End: Complemental strand, 13872707 - 13872562
Alignment:
| Q |
8 |
gttgatttgttggagaagcttgtggtgaagttgttttatgattcatcacttcctcatcattggcttgcaggtaattttgcacctgttaaggatgagacac |
107 |
Q |
| |
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||||||||||||||||| ||||| |||||||| ||||||||||| |||||| ||||||| ||| |||| ||||||||||| ||||| || |||||||||| |
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| T |
13872707 |
gttgatttgttggagaatcttgttgtgaagttcttttatgattcttcactttctcatcactggattgctggtaattttgctcctgtcaaagatgagacac |
13872608 |
T |
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| Q |
108 |
ctcctactaaggaccttcctgttaaaggttaccttccggtaagtga |
153 |
Q |
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| T |
13872607 |
ctcctacaaaggatcttcctgttaaaggacaccttccggttagtga |
13872562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 8 - 153
Target Start/End: Complemental strand, 13853856 - 13853711
Alignment:
| Q |
8 |
gttgatttgttggagaagcttgtggtgaagttgttttatgattcatcacttcctcatcattggcttgcaggtaattttgcacctgttaaggatgagacac |
107 |
Q |
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||||| |||||||| |||||||| ||||| || ||||||||||| |||||| ||||||||||||||| |||||||||||||||||| | |||||||||| |
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| T |
13853856 |
gttgacttgttggaaaagcttgttgtgaaattcttttatgattcttcactttgtcatcattggcttgctggtaattttgcacctgttcaagatgagacac |
13853757 |
T |
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| Q |
108 |
ctcctactaaggaccttcctgttaaaggttaccttccggtaagtga |
153 |
Q |
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| T |
13853756 |
ctcctattaaggatcttcctgttaagggacaccttccggttagtga |
13853711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 391 - 494
Target Start/End: Complemental strand, 13902023 - 13901920
Alignment:
| Q |
391 |
ctcatcactaaccatttgaagtcttttgtaggattgcttgaatggagagtttgtcagggtgggacctaatccgaagttttctcctgtcgctggatatcat |
490 |
Q |
| |
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|||| |||| ||||||| | || | ||| ||||||||||||||||||||||||| ||||||||||| ||| |||||||| |||| || ||||||||||| |
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| T |
13902023 |
ctcaccacttaccatttcacgtgtattgcaggattgcttgaatggagagtttgttagggtgggaccaaattcgaagtttgctccggtggctggatatcac |
13901924 |
T |
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| Q |
491 |
tggt |
494 |
Q |
| |
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|||| |
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| T |
13901923 |
tggt |
13901920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 588 - 682
Target Start/End: Complemental strand, 13872090 - 13871999
Alignment:
| Q |
588 |
catttctattttt-gcaggtttgatggagatgggtgcgtgcgcgattctcttcctttatgaaaatacatatattgctttcaagtttgttgttaatg |
682 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||| ||||||| |||||||||||||| |||||| |
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| T |
13872090 |
catttctattttttgcaggtttgatggagatgggtgcg----cgattctcttcctttaatcaaatatatatatttctttcaagtttgttattaatg |
13871999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 588 - 626
Target Start/End: Complemental strand, 13853192 - 13853153
Alignment:
| Q |
588 |
catttctattttt-gcaggtttgatggagatgggtgcgtg |
626 |
Q |
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| T |
13853192 |
catttctattttttgcaggtttgatggagatgggtgcgtg |
13853153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 596 - 626
Target Start/End: Complemental strand, 13901761 - 13901731
Alignment:
| Q |
596 |
tttttgcaggtttgatggagatgggtgcgtg |
626 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
13901761 |
tttttgcaggtttgatggagatgggtgcgtg |
13901731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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