View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0602-Insertion-29 (Length: 573)
Name: NF0602-Insertion-29
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602-Insertion-29 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 8 - 573
Target Start/End: Complemental strand, 7809818 - 7809253
Alignment:
| Q |
8 |
gttttctccctatctctcttttctaactgtatta---tcaatatatcacattatactcgcttttctttctcttaaagtgtttgtatgtggaagagtgttg |
104 |
Q |
| |
|
||||||||| | ||||| |||||| || |||||| |||||||||||||||| ||| |||||||| ||||||||| ||||||||||||| ||||||||| |
|
|
| T |
7809818 |
gttttctccttttctcttttttctcaccgtattactatcaatatatcacattaaacttgcttttctctctcttaaattgtttgtatgtgggagagtgttg |
7809719 |
T |
|
| Q |
105 |
taaaactattgagatacgaagtggtcaaaactagataacaattcaagnnnnnnnngcgaaaaaagataacctcatttactgataaactatattgtccaat |
204 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7809718 |
taaaacttttgagatacgaaatggtcaaaactaggtaacaattcaagttttttta-cgaaaaaagataacctcatttactgataaattatattgtccaat |
7809620 |
T |
|
| Q |
205 |
aaaggatcgtatcgtttacaagtccaatataaggtagagataaatttatttaatagacttgaaaatgatgtaaaatggctaataaatggtcaaattgttt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7809619 |
aaaggatcgtatcgtttacaagtccaatataaggtagagataaattaatttaatagacttgaaaatgatgtaaaatggctaataaatggtcaaattgttt |
7809520 |
T |
|
| Q |
305 |
tacatggacaaatagaaaattgcacaaacttatcatgaattttcaatccctcgtccgtatcaataatatggcaattggcaattgccacccaatccaaagg |
404 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7809519 |
tacatggacaaatagaa--ttgcacaaacttatcatgaattttcaatccctcgtccgtatcaataatatggcaattggcaattgccacccaatccaaagg |
7809422 |
T |
|
| Q |
405 |
tcactctcaatatgccaagacaaagtgtaaatccatttcaaagcttgtcatatactatgaccattttaaggtcgctctcaagttcaatttaacatttgca |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7809421 |
tcactctcaatatgccaagacaaagtgtaaatccatttcaaagtttgttatacactatgaccattttaaggtcgctctcaagttcaacttaacatttgca |
7809322 |
T |
|
| Q |
505 |
tcaaatctttaaataattatattcgaagtgtatcagacactaaatacaagtacatcttcagccaaaatt |
573 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||| || ||||||||||||||||||| |
|
|
| T |
7809321 |
tcaaatctttaaataattatattcgaagcgtgtcagacactaaatataaatacatcttcagccaaaatt |
7809253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2508 times since January 2019
Visitors: 3819