View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0602-Insertion-30 (Length: 329)
Name: NF0602-Insertion-30
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602-Insertion-30 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 8 - 329
Target Start/End: Complemental strand, 12219876 - 12219555
Alignment:
| Q |
8 |
attgaaagattgaaaagttctcgagcacctatcttcacatcttccagcatttccatgctatgtccgtgattaattagctgttacacataaccacaatttt |
107 |
Q |
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| T |
12219876 |
attgaaagattgaaaagttctcgagcacctatcttcacatcttccagcatttccatgctatgtccgtgattaattagctgttacacataaccacaatttt |
12219777 |
T |
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| Q |
108 |
tatagagttacattactctatgtttggtgcagtaaatataatacacaattttatttcattcatttgtatttatagtcactcaatcatataaccatttgat |
207 |
Q |
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| T |
12219776 |
tatagagttacattactctatgtttggtgcagtaaatataatacacaattatatttcattcatttgtatttatagtcactcaatcatataaccatttgat |
12219677 |
T |
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| Q |
208 |
ctttaaaatacatacacttttcatcatatagtcatacaaattgatagtttatatataactgaattgcaatctgaaaagttttacattgaccttatatcaa |
307 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12219676 |
ctttgaaatacatgtacttttcatcatatagtcatacaaattgatagtttatatataactgaattgcaatctgaaaagttttacattgaccttatatcaa |
12219577 |
T |
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| Q |
308 |
aattattctcttaattttagtc |
329 |
Q |
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| T |
12219576 |
aattattctcttaattttagtc |
12219555 |
T |
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