View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0602-Insertion-31 (Length: 333)

Name: NF0602-Insertion-31
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0602-Insertion-31
NF0602-Insertion-31
[»] chr4 (15 HSPs)
chr4 (86-293)||(5859172-5859377)
chr4 (114-307)||(5570039-5570230)
chr4 (155-269)||(5554334-5554446)
chr4 (170-307)||(5885286-5885421)
chr4 (155-270)||(5851969-5852082)
chr4 (114-284)||(5582246-5582417)
chr4 (215-307)||(3750046-3750138)
chr4 (211-302)||(5538277-5538368)
chr4 (153-262)||(6030656-6030763)
chr4 (244-307)||(5560103-5560166)
chr4 (253-307)||(251677-251731)
chr4 (157-307)||(5605975-5606120)
chr4 (229-307)||(5847248-5847326)
chr4 (8-66)||(5884280-5884338)
chr4 (211-307)||(5565657-5565753)
[»] chr8 (3 HSPs)
chr8 (251-307)||(1486343-1486399)
chr8 (155-203)||(1486410-1486458)
chr8 (169-199)||(23268622-23268652)
[»] scaffold0454 (2 HSPs)
scaffold0454 (155-203)||(1597-1645)
scaffold0454 (251-307)||(1529-1586)


Alignment Details
Target: chr4 (Bit Score: 173; Significance: 5e-93; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 86 - 293
Target Start/End: Complemental strand, 5859377 - 5859172
Alignment:
Q  86 ttccactcagggaaggttgtttctaaacctttataacacaaccatttgtgttgtggttaccaacaagagtaaacaacaatgagaattacattactttcat 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||| |||||||||    
T  5859377 ttccactcagggaaggttgtttctaaacctttataacacaaccatttttgttgtggttatcaccaagagtaaacaacaatgagaattacaatactttcat 5859278  T
Q  186 tgttttccttccttctcttctgctatactgcatatatatcactttccaaatctctttagcctctgccaaatgtcttgatgatcaagaatcattgctactc 285  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5859277 tgttttcctttcttctcttctgc--tactgcatatatatcactttccaaatctctttagcctctgccaaatgtcttgatgatcaagaatcattgctactc 5859180  T
Q  286 cagttaaa 293  Q
    || |||||    
T  5859179 caattaaa 5859172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 114 - 307
Target Start/End: Original strand, 5570039 - 5570230
Alignment:
Q  114 ctttataacacaaccatttgtgttgtggttaccaacaagagtaaacaacaatgagaattacattactttcattgttttccttccttctcttctgctatac 213  Q
    ||||||||||||| ||||| ||||||| ||  ||  || |||||| |||||||||||| |||||| |||||||||||||||||||||| | || |||  |    
T  5570039 ctttataacacaaacatttttgttgtgattgtcactaacagtaaataacaatgagaatcacattagtttcattgttttccttccttctatgctacta--c 5570136  T
Q  214 tgcatatatatcactttccaaatctctttagcctctgccaaatgtcttgatgatcaagaatcattgctactccagttaaaaaacaatctcacat 307  Q
    ||||||||| |||||||||||||| || | ||||| |||||||||||||| |||||| |||| ||| | |||||  ||||||| ||||||||||    
T  5570137 tgcatatatctcactttccaaatcactgttgcctcagccaaatgtcttgaggatcaacaatcgttgttgctccaactaaaaaataatctcacat 5570230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 155 - 269
Target Start/End: Complemental strand, 5554446 - 5554334
Alignment:
Q  155 taaacaacaatgagaattacattactttcattgttttccttccttctcttctgctat-actgcatatatatcactttccaaatctctttagcctctgcca 253  Q
    ||||||||||||| |||||||||| | ||||||||||||||||||| ||   ||||| ||||||||||||  | ||||||||||||||| ||||||||||    
T  5554446 taaacaacaatgaaaattacattagtgtcattgttttccttccttcgct---gctattactgcatatataatagtttccaaatctcttttgcctctgcca 5554350  T
Q  254 aatgtcttgatgatca 269  Q
    |||||||||| |||||    
T  5554349 aatgtcttgaggatca 5554334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 5885286 - 5885421
Alignment:
Q  170 attacattactttcattgttttccttccttctcttctgctatactgcatatatatcactttccaaatctctttagcctctgccaaatgtcttgatgatca 269  Q
    |||||||||||||||| ||||||| ||||| ||| || |||  |||||| | | |||||||||| | |||| | |||||||||||||||||||| |||||    
T  5885286 attacattactttcatcgttttccatccttatctgctacta--ctgcatttttttcactttccagaactctcttgcctctgccaaatgtcttgaggatca 5885383  T
Q  270 agaatcattgctactccagttaaaaaacaatctcacat 307  Q
    | ||||| || | ||||| |||||||||||||||||||    
T  5885384 acaatcactgttgctccaattaaaaaacaatctcacat 5885421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 270
Target Start/End: Original strand, 5851969 - 5852082
Alignment:
Q  155 taaacaacaatgagaattacattactttcattgttttccttccttctcttctgctatactgcatatatatcactttccaaatctctttagcctctgccaa 254  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||| || |  |||||||| ||||||| |||||||||| |  | ||||| |||||    
T  5851969 taaacaacaatgagaattacattacttccattgttttccttcattctctgctac--tactgcatttatatcagtttccaaatcaccgttgcctcagccaa 5852066  T
Q  255 atgtcttgatgatcaa 270  Q
    |||||| || ||||||    
T  5852067 atgtctcgaagatcaa 5852082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 114 - 284
Target Start/End: Original strand, 5582246 - 5582417
Alignment:
Q  114 ctttataacacaaccatttgtgttgtggttaccaacaagagtaaacaacaatgagaattacattactttcattgttttccttccttctcttctgctatac 213  Q
    ||||||||| |||||||| |||||||| ||  ||  | ||||||| |||||||||||| |||||| |||||||||||||||||||| ||| || |  |||    
T  5582246 ctttataactcaaccattagtgttgtgattgtcactacgagtaaataacaatgagaatcacattagtttcattgttttccttccttatctgctac--tac 5582343  T
Q  214 tgcatatatatcactttccaaat---ctctttagcctctgccaaatgtcttgatgatcaagaatcattgctact 284  Q
     | || |||||||||||||||||   | |  | ||||| |||||||||||||| |||||| ||||||| |||||    
T  5582344 agtatttatatcactttccaaatcaccaccattgcctcagccaaatgtcttgaagatcaacaatcattcctact 5582417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 307
Target Start/End: Complemental strand, 3750138 - 3750046
Alignment:
Q  215 gcatatatatcactttccaaatctctttagcctctgccaaatgtcttgatgatcaagaatcattgctactccagttaaaaaacaatctcacat 307  Q
    |||||||| ||| ||||||||||| | |  ||||||||||||||||||| |||||| |||||||| | || || |||||||||||||||||||    
T  3750138 gcatatatctcagtttccaaatctttgttacctctgccaaatgtcttgaggatcaacaatcattgttgcttcaattaaaaaacaatctcacat 3750046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 302
Target Start/End: Original strand, 5538277 - 5538368
Alignment:
Q  211 tactgcatatatatcactttccaaatctctttagcctctgccaaatgtcttgatgatcaagaatcattgctactccagttaaaaaacaatct 302  Q
    |||||||||||||||| | |||| |||||||| | |||||  | |||||||||||||||| |||||||||| || || ||||| ||||||||    
T  5538277 tactgcatatatatcaatatccatatctcttttgtctctggaatatgtcttgatgatcaacaatcattgctgcttcaattaaagaacaatct 5538368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 262
Target Start/End: Original strand, 6030656 - 6030763
Alignment:
Q  153 agtaaacaacaatgagaattacattactttcattgttttccttccttctcttctgctatactgcatatatatcactttccaaatctctttagcctctgcc 252  Q
    |||| ||| |||||| |||| |||||||||||||||||||||||||||| | || |  |||||||| || |||| |||| || ||||| |  ||||||||    
T  6030656 agtagacagcaatgaaaattgcattactttcattgttttccttccttctatgctac--tactgcatttacatcagtttcaaattctctgttacctctgcc 6030753  T
Q  253 aaatgtcttg 262  Q
    ||||||||||    
T  6030754 aaatgtcttg 6030763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 5560166 - 5560103
Alignment:
Q  244 gcctctgccaaatgtcttgatgatcaagaatcattgctactccagttaaaaaacaatctcacat 307  Q
    |||||| ||||||||||||| |||||| |||||||| | |  || |||||||||||||||||||    
T  5560166 gcctctaccaaatgtcttgaggatcaacaatcattgttgcatcaattaaaaaacaatctcacat 5560103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 251677 - 251731
Alignment:
Q  253 aaatgtcttgatgatcaagaatcattgctactccagttaaaaaacaatctcacat 307  Q
    |||||||||  ||||||| |||||||||  ||||| |||||||||||||||||||    
T  251677 aaatgtctttttgatcaacaatcattgcctctccaattaaaaaacaatctcacat 251731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 307
Target Start/End: Complemental strand, 5606120 - 5605975
Alignment:
Q  157 aacaacaatgaga---attacattactttcattgttttccttccttctcttctgctatactgcatatatatcactttccaaatctctttagcctctgcca 253  Q
    |||||||||||||   ||||||||| ||||| ||||||| ||||||||||        ||| ||||||||| | |||||| || ||| | ||||| || |    
T  5606120 aacaacaatgagatcaattacattagtttcaatgttttctttccttctct--------acttcatatatatgagtttccagatatctgttgcctcggcta 5606029  T
Q  254 aatgtcttgatgatcaagaatcattgctactccagttaaaaaacaatctcacat 307  Q
    |||||||||| |||||| |||||||  | |||||  | ||||||||||||||||    
T  5606028 aatgtcttgaggatcaacaatcattattgctccaaattaaaaacaatctcacat 5605975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 307
Target Start/End: Original strand, 5847248 - 5847326
Alignment:
Q  229 ttccaaatctctttagcctctgccaaatgtcttgatgatcaagaatcattgctactccagttaaaaaacaatctcacat 307  Q
    ||||||| |||| | |||| ||||||||||||||| |||||| |||||||  |  |||| || ||||||||||||||||    
T  5847248 ttccaaacctctcttgcctttgccaaatgtcttgaggatcaacaatcatttttgatccaatttaaaaacaatctcacat 5847326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 5884338 - 5884280
Alignment:
Q  8 gtaggtttccctgacatctaggctttgagttataagtgttttctggacttcaaactttg 66  Q
    |||||| |||||| ||||||||||||||||||||| | |||||| ||||| ||| ||||    
T  5884338 gtaggtgtccctggcatctaggctttgagttataaatattttcttgacttgaaattttg 5884280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 307
Target Start/End: Complemental strand, 5565753 - 5565657
Alignment:
Q  211 tactgcatatatatcactttccaaatctctttagcctctgccaaatgtcttgatgatcaagaatcattgctactccagttaaaaaacaatctcacat 307  Q
    |||| ||||||||| | |||||| || ||| | ||||| || ||||||||||| |||||| |||||||  | |||||  | ||||||||||||||||    
T  5565753 tacttcatatatatgagtttccagatatctgttgcctcggctaaatgtcttgaggatcaacaatcattattgctccaaattaaaaacaatctcacat 5565657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 307
Target Start/End: Complemental strand, 1486399 - 1486343
Alignment:
Q  251 ccaaatgtcttgatgatcaagaatcattgctactccagttaaaaaacaatctcacat 307  Q
    ||||||||||||| |||||| | |||||| | |||||||||||||||||||||||||    
T  1486399 ccaaatgtcttgaggatcaacactcattgttgctccagttaaaaaacaatctcacat 1486343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 1486458 - 1486410
Alignment:
Q  155 taaacaacaatgagaattacattactttcattgttttccttccttctct 203  Q
    ||||||||||||| |||||| ||| |||||||||||||||| |||||||    
T  1486458 taaacaacaatgaaaattaccttagtttcattgttttcctttcttctct 1486410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 199
Target Start/End: Complemental strand, 23268652 - 23268622
Alignment:
Q  169 aattacattactttcattgttttccttcctt 199  Q
    |||||||||||||||||||||||||||||||    
T  23268652 aattacattactttcattgttttccttcctt 23268622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0454 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 1645 - 1597
Alignment:
Q  155 taaacaacaatgagaattacattactttcattgttttccttccttctct 203  Q
    ||||||||||||| |||||| ||| |||||||||||||||| |||||||    
T  1645 taaacaacaatgaaaattaccttagtttcattgttttcctttcttctct 1597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0454; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 307
Target Start/End: Complemental strand, 1586 - 1529
Alignment:
Q  251 ccaaatgtcttgatgatcaagaatcattgctactccagttaa-aaaacaatctcacat 307  Q
    ||||||||||||| |||||| | |||||| | |||||||||| |||||||||||||||    
T  1586 ccaaatgtcttgaggatcaacactcattgttgctccagttaaaaaaacaatctcacat 1529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2712 times since January 2019
Visitors: 3823