View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0602-Insertion-32 (Length: 720)
Name: NF0602-Insertion-32
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602-Insertion-32 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 299 - 720
Target Start/End: Original strand, 34996102 - 34996523
Alignment:
| Q |
299 |
atcttcttaacaacatagtcagatttttctttctctttgtggctattgcaacaaaaacagttagagaaagtttccctaattgnnnnnnnagtacaaatgt |
398 |
Q |
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| T |
34996102 |
atcttcttaacaacatagtcagatttttctttctctttgtggctattgcaacaaaaacagttagagaaggtttccctaattgtttttttggtacaaatgt |
34996201 |
T |
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| Q |
399 |
ttccccaaatttacctgctcctttcatgacataaatgaatcaagataaattttagtagcatcacattcacatgggttaccacttaccagaagtagttgac |
498 |
Q |
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| T |
34996202 |
ttccccaaatttacctgctcctttcatgacataaatgaatcaagataaattttagtagcatcacattcacatgggttaccacttaccagaagtagttgac |
34996301 |
T |
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| Q |
499 |
atacatactgcatgacacaaattggccaacctaaagatgtattagattcatcaacttagatttcagtacctaaaatccttttctttgagcaaatatttac |
598 |
Q |
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| T |
34996302 |
atacatactgcatgacacaaattggccaacctaaagatgtattagattcatcaacttagatttcagtacctaaaatccttttctttgagcaaatatttac |
34996401 |
T |
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| Q |
599 |
ttgaaattacctacctcctcacccactaagataaagaggtcggtcttcaacttctttgtcctattttaattttatgctagtgtatttgtcaaagtttaac |
698 |
Q |
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| T |
34996402 |
ttgaaattacctacctcctcacccactaagataaagaggtcggtcttcaacttctttgtcctattttaattttatgctagtgtatttgtcaaagtttaac |
34996501 |
T |
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| Q |
699 |
ttctcattagttgaaattttac |
720 |
Q |
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| T |
34996502 |
gtttcatcagttgaaattttac |
34996523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 34995961 - 34996024
Alignment:
| Q |
116 |
gcctaccaccccagctttacgagctatccaaatttctattatatcagtgtaatttgatcacaag |
179 |
Q |
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| T |
34995961 |
gcctatcaccccagctgtacgagctatccaaatttctaatatatcagtgtaatttgatcacaag |
34996024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 34995846 - 34995893
Alignment:
| Q |
7 |
atggatcgaagatcatactaa-cataaaaatgacatggaagcttctta |
53 |
Q |
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| T |
34995846 |
atggatcgaagatcatactaaacataaaaatgacatggaagcttctta |
34995893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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