View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0602-Insertion-33 (Length: 502)
Name: NF0602-Insertion-33
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602-Insertion-33 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 7 - 494
Target Start/End: Original strand, 35695817 - 35696313
Alignment:
| Q |
7 |
agttacaactcttgatcgaccggctgagatcattttaatgtaaaaaacataccgtgtgattttctcctctcgatctcaaatgaatggccgaaattaaccg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35695817 |
agttacaactcttgatcgaccggctgagatcattttaatgtaaaaaacataccgtgtgattttctcctctcgatctcagatgaatggccgaaattaaccg |
35695916 |
T |
|
| Q |
107 |
gttgaaatgcaaacaacacggttgtgatccattttctatcctatttttggtagaaggttcttaactagttgagtaaaa-----------tcataagaaat |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35695917 |
gttgaaatgcaaacaacacggttgtgatccattttctatcctatttttggtagaaggttcttaactagttgagtaaaaaatcaatgaaatcataagaaat |
35696016 |
T |
|
| Q |
196 |
tgtccatgacagataccaaaaccaatttatctcaacaaccactattctctccttcatccaatctttccatgcatgaatcaaacccnnnnnnnnnnnnnnn |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35696017 |
tgtccatgacagataccaaaaccaatttatctcaacaaccactattctctccttcatccaatcttttcatgcatgaatcaaacccaaaaataaaataaaa |
35696116 |
T |
|
| Q |
296 |
ncatgccatttttagctttccatcataaccaaatcatgttgtttatccccttagagagaaagaaagaatcatttccatttgtccaattcacaaggtggtg |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35696117 |
--atgccatttttagctttccatcataaccaaatcatgttgtttatccccttagagagaaagaaagaatcatttccatttgtccaattcacaaggtggtg |
35696214 |
T |
|
| Q |
396 |
ggtgagtctcagccataacaccggctgctccccctccatcaatcaccccatagcattatcatttcaattttcacaacaaaatcaacctcatcacaacaa |
494 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35696215 |
ggtgagtctcagccataacaccggctgctccccctccatcaatcaccccatagcattatcatttcaattttcacaacaaaatcaacctcatcacaacaa |
35696313 |
T |
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