View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0602-Insertion-34 (Length: 401)
Name: NF0602-Insertion-34
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602-Insertion-34 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 7 - 374
Target Start/End: Complemental strand, 28159535 - 28159168
Alignment:
| Q |
7 |
aatcacaagcctctgaactttagtgtacagctgaatccattattaaaatattataaatggaactcagcttcatttttctgaacaagaatggaacttagct |
106 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28159535 |
aatcacaagcctctgaactttattgtacagctgaatccattattaaaatattataaatggaactcagcttcatttttctgaacaagaatggaactcagct |
28159436 |
T |
|
| Q |
107 |
tcttcactgaaatatataaatatttgaaagttttaaatagaccaaactaaatatacatggatatgaaaattaacacgtnnnnnnngtgagcaaatataca |
206 |
Q |
| |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
28159435 |
tcttaactgaactatataaatatttgaaagttttaaatagaccaaactaaatatacatggatatgaaaattaacacgtaaaaaaagtgagctaatataca |
28159336 |
T |
|
| Q |
207 |
ttgatatgaagattaaattccctcactttgtactacatgacgtaagtttcattttgagtaaaagaagccatgtgatagccattttcaatgctaagtccca |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28159335 |
ttgatatgaagattaaattccctcactttgtactacatgacataagtttcattttgagtaaaagaagtcatgtgatagccattttcaatgctaagtccca |
28159236 |
T |
|
| Q |
307 |
tatatagacatacttgatagccattgaatctcatctaaatcaatacccaaatcagcccacaccataaa |
374 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28159235 |
tatatagacatacttgatagccattgaatcccatctaaatcaatacccaaatcagcccacaccataaa |
28159168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 7 - 377
Target Start/End: Original strand, 14358854 - 14359224
Alignment:
| Q |
7 |
aatcacaagcctctgaactttagtgtacagctgaatccattattaaaatattataaatggaactcagcttcatttttctgaacaagaatggaacttagct |
106 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
14358854 |
aatcacaagcatctgaactttagtgtacagctgaatccattattaaaatattataaatggaactcggcttcatttttctgaacaagaatggaactcagct |
14358953 |
T |
|
| Q |
107 |
tcttcactgaaatatataaatatttgaaagttttaaatagaccaaactaaatatacatggatatgaaaattaacacgtnnnnnnngtgagcaaatataca |
206 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
14358954 |
tcttaactgaaatatataaatatttgaaagttttaaatagaccaaactaaatatacatggatatgaaaattaacaagtaaaaaaagtgagcaaatataca |
14359053 |
T |
|
| Q |
207 |
ttgatatgaagattaaattccctcactttgtactacatgacgtaagtttcattttgagtaaaagaagccatgtgatagccattttcaatgctaagtccca |
306 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
14359054 |
ttgatatgaagattaaattccctcaatttgtactacatgacgtaagttttattttgagtaaaagaagccatgtgatagccattttcaatgctaagtccaa |
14359153 |
T |
|
| Q |
307 |
tatatagacatacttgatagccattgaatctcatctaaatcaatacccaaatcagcccacaccataaaaca |
377 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14359154 |
tatatagacatacttgatagccattgaatcccatctaaatcaatacccaaatcagcccacaccataaaaca |
14359224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 224 - 378
Target Start/End: Original strand, 6162977 - 6163131
Alignment:
| Q |
224 |
ttccctcactttgtactacatgacgtaagtttcattttgagtaaaagaagccatgtgatagccattttcaatgctaagtcccatatatagacatacttga |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6162977 |
ttccctcactttgtactacatgacgtaagtttcattttgagtaaaagaagccatgtgatagccattttcaatgctaagtcccacatatagacatacttga |
6163076 |
T |
|
| Q |
324 |
tagccattgaatctcatctaaatcaatacccaaatcagcccacaccataaaacag |
378 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6163077 |
tagccattgaatcccatctaaatcaatacccaaatcagcccacaccataaaacag |
6163131 |
T |
|
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