View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0602-Insertion-35 (Length: 442)

Name: NF0602-Insertion-35
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0602-Insertion-35
NF0602-Insertion-35
[»] chr6 (3 HSPs)
chr6 (8-439)||(28138392-28138822)
chr6 (359-431)||(6982835-6982906)
chr6 (361-418)||(10501981-10502038)
[»] chr4 (4 HSPs)
chr4 (119-294)||(2048742-2048920)
chr4 (340-418)||(2048966-2049044)
chr4 (359-429)||(3958945-3959014)
chr4 (360-435)||(39735815-39735889)
[»] chr2 (6 HSPs)
chr2 (188-299)||(18559840-18559952)
chr2 (365-431)||(21949895-21949960)
chr2 (218-260)||(21950067-21950109)
chr2 (381-435)||(41411516-41411569)
chr2 (340-416)||(18559723-18559799)
chr2 (381-429)||(40275158-40275205)
[»] chr8 (4 HSPs)
chr8 (119-299)||(40715703-40715887)
chr8 (340-431)||(6596498-6596588)
chr8 (221-294)||(6596378-6596452)
chr8 (359-411)||(19168178-19168230)
[»] chr7 (5 HSPs)
chr7 (119-294)||(38835898-38836075)
chr7 (340-431)||(8308208-8308298)
chr7 (340-418)||(38836121-38836199)
chr7 (359-431)||(49094543-49094614)
chr7 (359-432)||(30559359-30559431)
[»] chr5 (4 HSPs)
chr5 (97-293)||(33417157-33417366)
chr5 (343-431)||(33417416-33417503)
chr5 (340-379)||(15867381-15867420)
chr5 (365-435)||(31610042-31610111)
[»] scaffold0098 (1 HSPs)
scaffold0098 (212-260)||(21800-21848)
[»] chr1 (5 HSPs)
chr1 (212-298)||(17937621-17937709)
chr1 (361-435)||(42080685-42080758)
chr1 (212-260)||(17867361-17867409)
chr1 (131-187)||(17937528-17937584)
chr1 (381-429)||(43403894-43403941)
[»] chr3 (1 HSPs)
chr3 (359-403)||(11536252-11536296)


Alignment Details
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 8 - 439
Target Start/End: Complemental strand, 28138822 - 28138392
Alignment:
Q  8 ggattcggggaggcgtttatctccacccttggtgaatgatgtaattgttgttgttccctcaacttctactcttgttactggtttgcctggtttggatagc 107  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138822 ggattcggggaggcgtttatctccacccttggagaatgatgtaattgttgttgttccctcaacttctactcttgttactggtttgcctggtttggatagc 28138723  T
Q  108 acactcccgcattgtgctctgcatcaacctatcacaacttaccacacctctctaacatcagacaaacttccggttttggaaccagtgcatgctgcaaatg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138722 acactcccgcattgtgctctgcatcaacctatcacaacttaccacacctctctaacatcagacaaacttccggttttggaaccagtgcatgctgcaaatg 28138623  T
Q  208 tttgttcttctgaagctcagagaagtgtggacattttacaaaagttttgggggattatactaatggagagcatgattctagccttgtctgtctggcaaca 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138622 tttgttcttctgaagctcagagaagtgtggacattttacaaaagttttgggggattatactaatggagagcatgattctagccttgtctgtctggcaaca 28138523  T
Q  308 accaagaacnnnnnnnnnnnnnnnnnnnnnnntagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtca 407  Q
    |||||||||                       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138522 accaagaacaaaaaggaaaaaaagcagaaaaatagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtca 28138423  T
Q  408 aaagtaatccctaaatatttgtgactgtattt 439  Q
    |||||||| |||||||||||||||||||||||    
T  28138422 aaagtaat-cctaaatatttgtgactgtattt 28138392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 431
Target Start/End: Original strand, 6982835 - 6982906
Alignment:
Q  359 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatccctaaatatttgtga 431  Q
    |||| ||||||| |||||||| |||||||||| |||||||||||| ||||||| ||| | |||||||||||||    
T  6982835 agcataagtagtgagcacatacaaactcgttcaaaaaagggtgtaatcaaaagcaat-cttaaatatttgtga 6982906  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 418
Target Start/End: Complemental strand, 10502038 - 10501981
Alignment:
Q  361 cacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatccc 418  Q
    ||||||||||||||||||  |||||||||| |||||||||||| | ||||| ||||||    
T  10502038 cacaagtagtaagcacatccaaactcgttccaaaaagggtgtaataaaaagcaatccc 10501981  T

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Target: chr4 (Bit Score: 74; Significance: 9e-34; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 119 - 294
Target Start/End: Original strand, 2048742 - 2048920
Alignment:
Q  119 ttgtgctctgcatcaacctatcacaacttaccacacctctctaacatcagacaaacttccggttttg---gaaccagtgcatgctgcaaatgtttgttct 215  Q
    ||||||| ||| ||| |||||||| |||||| ||||||||||| || ||||||| ||||| ||||||   || ||||||||| |||||  ||||||||||    
T  2048742 ttgtgctatgcctcagcctatcactacttactacacctctctatcagcagacaagcttcctgttttgaaggatccagtgcatactgcagttgtttgttct 2048841  T
Q  216 tctgaagctcagagaagtgtggacattttacaaaagtttt-gggggattatactaatggagagcatgattctagccttgt 294  Q
    |||| ||||||||||||||| |||| |||||||||||||| |||||||||||| ||||  |||||||| |||||||||||    
T  2048842 tctgcagctcagagaagtgtagaca-tttacaaaagttttggggggattataccaatgaggagcatgagtctagccttgt 2048920  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 418
Target Start/End: Original strand, 2048966 - 2049044
Alignment:
Q  340 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatccc 418  Q
    ||||||||||||| | || |||||||||||| |||| ||| |||||||||| |||||||||||  ||||||| ||||||    
T  2048966 tagacaagtttcatcaaaaagcacaagtagtgagcatatacaaactcgttccaaaaagggtgttatcaaaagcaatccc 2049044  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 359 - 429
Target Start/End: Complemental strand, 3959014 - 3958945
Alignment:
Q  359 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatccctaaatatttgt 429  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||  ||||||| |||||| ||||||||||    
T  3959014 agcacaaatagtgagcacatacaaactcgttctaaaaagggtgtcatcaaaagcaatccc-aaatatttgt 3958945  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 435
Target Start/End: Original strand, 39735815 - 39735889
Alignment:
Q  360 gcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatccctaaatatttgtgactgt 435  Q
    ||||||||||| |||||||| |||||||||| || ||||||||| ||||||| ||| || |||||| |||||||||    
T  39735815 gcacaagtagtgagcacatacaaactcgttccaagaagggtgtaatcaaaagcaat-ccaaaatatatgtgactgt 39735889  T

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Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 188 - 299
Target Start/End: Complemental strand, 18559952 - 18559840
Alignment:
Q  188 accagtgcatgctgcaaatgtttgttcttctgaagctcagagaagtgtggacattttacaaaagttttg-ggggattatactaatggagagcatgattct 286  Q
    |||||||||| |||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||  ||||| || |||    
T  18559952 accagtgcatactgcaactgtttgttcttctgaagttcagagaagtgtgaacattttacaaaagttttgaggggattatactaatgaggagcacgaatct 18559853  T
Q  287 agccttgtctgtc 299  Q
    ||| |||||||||    
T  18559852 agctttgtctgtc 18559840  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 431
Target Start/End: Complemental strand, 21949960 - 21949895
Alignment:
Q  365 agtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatccctaaatatttgtga 431  Q
    |||||| |||||||| ||||||||||||||||||||||| ||||||| |||||| ||||||||||||    
T  21949960 agtagtgagcacatacaaactcgttctaaaaagggtgtaatcaaaagcaatccc-aaatatttgtga 21949895  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 21950109 - 21950067
Alignment:
Q  218 tgaagctcagagaagtgtggacattttacaaaagttttggggg 260  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  21950109 tgaagctcagagaagtgtggacattttacaaaagttttggggg 21950067  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 435
Target Start/End: Complemental strand, 41411569 - 41411516
Alignment:
Q  381 aaactcgttctaaaaagggtgtagtcaaaagtaatccctaaatatttgtgactgt 435  Q
    |||||||||| |||||||||||| ||||||| |||||| ||||||||||||||||    
T  41411569 aaactcgttccaaaaagggtgtaatcaaaagcaatccc-aaatatttgtgactgt 41411516  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 416
Target Start/End: Complemental strand, 18559799 - 18559723
Alignment:
Q  340 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatc 416  Q
    ||||||||||||||| || || | |||||   |||| ||| ||||||||||||||||||| ||| ||||||| ||||    
T  18559799 tagacaagtttcaccaaaaagtataagtaacgagcagatacaaactcgttctaaaaagggcgtaatcaaaagcaatc 18559723  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 429
Target Start/End: Original strand, 40275158 - 40275205
Alignment:
Q  381 aaactcgttctaaaaagggtgtagtcaaaagtaatccctaaatatttgt 429  Q
    ||||||||||||||||||||||  ||||||| |||||| ||||||||||    
T  40275158 aaactcgttctaaaaagggtgtcatcaaaagcaatccc-aaatatttgt 40275205  T

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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 119 - 299
Target Start/End: Original strand, 40715703 - 40715887
Alignment:
Q  119 ttgtgctctgcatcaacctatcacaacttaccacacctctctaacatcagacaaacttccggttttggaacc---agtgcatgctgcaaatgtttgttct 215  Q
    ||||||| ||| ||||||||| || ||||||||| |||||||| || |||| || |||||  ||||| | ||   ||||||| |||||  || || ||||    
T  40715703 ttgtgctatgcctcaacctataactacttaccactcctctctatcagcagataagcttcctattttgaagcctccagtgcatactgcagttgctttttct 40715802  T
Q  216 tctgaagctcagagaagtgtggacattttacaaaagtttt-gggggattatactaatggagagcatgattctagccttgtctgtc 299  Q
    | |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||  |||||||| ||||||||||| ||||    
T  40715803 tttgaagctcagagaagtgtggacattttacaaaagttttggggggattataccaatgaggagcatgagtctagccttgtttgtc 40715887  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 340 - 431
Target Start/End: Original strand, 6596498 - 6596588
Alignment:
Q  340 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatccctaaatatttgtga 431  Q
    |||||||||||||||||| |||| ||||||| |||||||  |||||| |||||||||||||||| ||||||| ||| |||||||||||||||    
T  6596498 tagacaagtttcaccgaaaagcataagtagtgagcacatccaaactcattctaaaaagggtgtaatcaaaagcaat-cctaaatatttgtga 6596588  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 221 - 294
Target Start/End: Original strand, 6596378 - 6596452
Alignment:
Q  221 agctcagagaagtgtggacattttacaaaagttttggggga-ttatactaatggagagcatgattctagccttgt 294  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||  || ||  |||||||| |||||||||||    
T  6596378 agctcagagaagtgtggatattttacaaaagttttgggggagttatcatactgaggagcatgaatctagccttgt 6596452  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 411
Target Start/End: Original strand, 19168178 - 19168230
Alignment:
Q  359 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaag 411  Q
    ||||||| || | |||||||| ||||||||||||||||||||||  |||||||    
T  19168178 agcacaattattgagcacatacaaactcgttctaaaaagggtgtcatcaaaag 19168230  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 119 - 294
Target Start/End: Original strand, 38835898 - 38836075
Alignment:
Q  119 ttgtgctctgcatcaacctatcacaacttaccacacctctctaacatcagacaaacttccggttttggaacc---agtgcatgctgcaaatgtttgttct 215  Q
    ||||||| ||| ||| |||||||| |||||||||||||||||| || ||||||| ||||  |||||| |  |   ||||||| |||||  ||||||||||    
T  38835898 ttgtgctatgcctcagcctatcactacttaccacacctctctatcaacagacaagcttcttgttttgaaggctctagtgcatactgcagttgtttgttct 38835997  T
Q  216 tctgaagctcagagaagtgtggacattttacaaaagttttgggg-gattatactaatggagagcatgattctagccttgt 294  Q
    |||| ||||||||  ||||| ||||||||||||||||||||||| |||||||| ||||  |||||||| |||||||||||    
T  38835998 tctgcagctcaga--agtgtagacattttacaaaagttttggggcgattataccaatgaggagcatgagtctagccttgt 38836075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 340 - 431
Target Start/End: Complemental strand, 8308298 - 8308208
Alignment:
Q  340 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatccctaaatatttgtga 431  Q
    |||||||||||||| ||| || ||||||||| |||||||| |||||||||||||||||  |||| |||||||||||||| ||||||||||||    
T  8308298 tagacaagtttcactgaaaagtacaagtagtgagcacatacaaactcgttctaaaaagaatgtaatcaaaagtaatccc-aaatatttgtga 8308208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 418
Target Start/End: Original strand, 38836121 - 38836199
Alignment:
Q  340 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatccc 418  Q
    ||||||||||||||| || |||||||||||| |||| ||| |||||||||| ||||| |||||  ||||||| ||||||    
T  38836121 tagacaagtttcaccaaaaagcacaagtagtgagcatatacaaactcgttccaaaaatggtgttatcaaaagcaatccc 38836199  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 431
Target Start/End: Complemental strand, 49094614 - 49094543
Alignment:
Q  359 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatccctaaatatttgtga 431  Q
    |||||||||||| |||||||| |||| ||||| ||||| |||||  ||||||| |||||| ||||||||||||    
T  49094614 agcacaagtagtgagcacatacaaacacgttccaaaaaaggtgttatcaaaagcaatccc-aaatatttgtga 49094543  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 432
Target Start/End: Complemental strand, 30559431 - 30559359
Alignment:
Q  359 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatccctaaatatttgtgac 432  Q
    ||||||||| || |||||||| ||||| |||| |||||||||||  ||||||| |||||| ||| |||||||||    
T  30559431 agcacaagtcgtgagcacatagaaacttgttccaaaaagggtgttatcaaaagcaatccc-aaagatttgtgac 30559359  T

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Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 97 - 293
Target Start/End: Original strand, 33417157 - 33417366
Alignment:
Q  97 gtttggatagcacactcccgcattgtgctctgcatcaacctatcacaacttaccacacctctctaacatcagacaaacttccggttttgga--------- 187  Q
    |||||||||||||||||| || | ||||| ||| |||||||||||| ||||||||| |||||||| |  |||||||||||||  |||||||             
T  33417157 gtttggatagcacactcctgcctggtgctatgcctcaacctatcactacttaccacgcctctctatccgcagacaaacttcctattttggaacttgtcaa 33417256  T
Q  188 ---accagtgcatgctgcaaatgtttgttcttctgaagctcagagaagtgtggacattttacaaaagttttg-ggggattatactaatggagagcatgat 283  Q
       ||||||||||| || |  ||| |||||||||| || ||||||| |||| |||||||||||| ||||||| ||||||||||||| ||  ||||||||     
T  33417257 cacaccagtgcatgatggagttgtctgttcttctgcagatcagagatgtgtcgacattttacaacagttttgaggggattatactattgaggagcatgag 33417356  T
Q  284 tctagccttg 293  Q
    ||||||||||    
T  33417357 tctagccttg 33417366  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 343 - 431
Target Start/End: Original strand, 33417416 - 33417503
Alignment:
Q  343 acaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatccctaaatatttgtga 431  Q
    |||||||||||| || |||||||||||| |||||||| ||| ||||||||||||||||||| ||||||||||| |||||||||||||||    
T  33417416 acaagtttcaccaaaaagcacaagtagtgagcacatacaaattcgttctaaaaagggtgtaatcaaaagtaat-cctaaatatttgtga 33417503  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 379
Target Start/End: Complemental strand, 15867420 - 15867381
Alignment:
Q  340 tagacaagtttcaccgaagagcacaagtagtaagcacata 379  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  15867420 tagacaagtttcaccaaaaagcacaagtagtaagcacata 15867381  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 435
Target Start/End: Original strand, 31610042 - 31610111
Alignment:
Q  365 agtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatccctaaatatttgtgactgt 435  Q
    |||||| |||||||| |||| |||||||||||||||||  ||||||| |||||| |||||| || ||||||    
T  31610042 agtagtgagcacatacaaacgcgttctaaaaagggtgtgatcaaaagcaatccc-aaatatatgcgactgt 31610111  T

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Target: scaffold0098 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 21848 - 21800
Alignment:
Q  212 ttcttctgaagctcagagaagtgtggacattttacaaaagttttggggg 260  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||    
T  21848 ttcttctgcagctcagaaaagtgtggacattttacaaaagttttggggg 21800  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 17937621 - 17937709
Alignment:
Q  212 ttcttctgaagctcagagaagtgtggacattttac-aaaagttttgggg-gattatactaatggagagcatgattctagccttgtctgt 298  Q
    |||||||| ||||||||||||||| |||||||||| ||||||||||||| ||||| |||| ||  || ||||| |||| ||||||||||    
T  17937621 ttcttctgcagctcagagaagtgttgacattttacaaaaagttttggggtgattacactactgaggaacatgaatctaaccttgtctgt 17937709  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 435
Target Start/End: Complemental strand, 42080758 - 42080685
Alignment:
Q  361 cacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatccctaaatatttgtgactgt 435  Q
    |||||||||| |||||||  |||||||||| |||||||||||| ||||||| |||||| |||||| | |||||||    
T  42080758 cacaagtagtgagcacatccaaactcgttccaaaaagggtgtaatcaaaagcaatccc-aaatatgtttgactgt 42080685  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 17867409 - 17867361
Alignment:
Q  212 ttcttctgaagctcagagaagtgtggacattttacaaaagttttggggg 260  Q
    |||||||  |||| ||||||||||||||||||||||||| |||||||||    
T  17867409 ttcttctacagcttagagaagtgtggacattttacaaaatttttggggg 17867361  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 17937528 - 17937584
Alignment:
Q  131 tcaacctatcacaacttaccacacctctctaacatcagacaaacttccggttttgga 187  Q
    |||||||||||| ||| | ||||||||||||||| ||||||| | ||| ||||||||    
T  17937528 tcaacctatcactactaaacacacctctctaacagcagacaagcgtcctgttttgga 17937584  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 429
Target Start/End: Complemental strand, 43403941 - 43403894
Alignment:
Q  381 aaactcgttctaaaaagggtgtagtcaaaagtaatccctaaatatttgt 429  Q
    ||||||||||||||||||||||  ||||||| |||||| ||||||||||    
T  43403941 aaactcgttctaaaaagggtgtcatcaaaagcaatccc-aaatatttgt 43403894  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 403
Target Start/End: Original strand, 11536252 - 11536296
Alignment:
Q  359 agcacaagtagtaagcacatataaactcgttctaaaaagggtgta 403  Q
    |||||||||||| |||||||| |||||||||  ||||||||||||    
T  11536252 agcacaagtagtgagcacatacaaactcgtttaaaaaagggtgta 11536296  T

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