View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0602_high_14 (Length: 305)
Name: NF0602_high_14
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 30 - 292
Target Start/End: Complemental strand, 38213903 - 38213635
Alignment:
| Q |
30 |
ctataattactgcaacgatcttaagcgattcccagaaggtattcctgctgagtgtaagcgtccaaggttctgatgagagatcaatgatgaagaacatata |
129 |
Q |
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| T |
38213903 |
ctataattactgcaacgatcttaagcgattcccagaaggtattcctgctgagtgtaagcgtccaaggttctgatgagagatcaatgatgaagaacatata |
38213804 |
T |
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| Q |
130 |
atagccatc-----ttaatttgttatgattcttttattttatatattcctctata-tattttggtgtctatcttagataacacgtgatcaaataaatcaa |
223 |
Q |
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| T |
38213803 |
atagccatcttattttaatttgttatgattctttgattttatatattcctctatatttttttggtgtctatcttagataacatgtgatcaaataaatcac |
38213704 |
T |
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| Q |
224 |
attctttgtagtttgtatcacttccttatcagttttcggtatattgagaacactatatataccctgttc |
292 |
Q |
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| T |
38213703 |
attctttgtagtttgtaccacttccttatcagttttcggtatattgagaacactatatataccctgttc |
38213635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 30 - 233
Target Start/End: Complemental strand, 38218122 - 38217913
Alignment:
| Q |
30 |
ctataattactgcaacgatcttaagcgattcccagaaggtattcctgctgagtgtaagcgtccaaggttctgatgagagatcaatgatgaagaacatata |
129 |
Q |
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| T |
38218122 |
ctataattactgcaacgatcttaagcgattcccagaaggtattcctgctgagtgtaagcgtccaaggttctgatgagagatcaatgatgaagaacatata |
38218023 |
T |
|
| Q |
130 |
atagccatc-----ttaatttgttatgattcttttattttatatattcctctata-tattttggtgtctatcttagataacacgtgatcaaataaatcaa |
223 |
Q |
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| T |
38218022 |
atagccatcttattttaatttgttatgattctttgattttatatattcctctatatttttttggtgtctattttagatagcacatgatcaaataaatcaa |
38217923 |
T |
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| Q |
224 |
attctttgta |
233 |
Q |
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|||||||||| |
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| T |
38217922 |
attctttgta |
38217913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 42991601 - 42991666
Alignment:
| Q |
31 |
tataattactgcaacgatcttaagcgattcccagaaggtattcctgctgagtgtaagcgtccaagg |
96 |
Q |
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| T |
42991601 |
tataattactgcaacgatcttaagcgatttccacaaggtattcctgctgagtgtaggcgttcaagg |
42991666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 233
Target Start/End: Original strand, 42993602 - 42993697
Alignment:
| Q |
139 |
ttaatttgttatgattcttttattttatatattcctctatatatttt-ggtgtctatcttagataacacgtgatcaaataaatcaaattctttgta |
233 |
Q |
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||||||| |||||||||||| |||| ||| ||||||| ||| |||| ||||||| | ||| |||||| |||| ||||||||||||||||||||| |
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| T |
42993602 |
ttaatttattatgattctttgatttactatcttcctctgtatttttttggtgtctgttttatataacagatgatgaaataaatcaaattctttgta |
42993697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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