View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0602_high_16 (Length: 292)

Name: NF0602_high_16
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0602_high_16
NF0602_high_16
[»] chr7 (3 HSPs)
chr7 (23-263)||(28551595-28551835)
chr7 (23-263)||(27813110-27813350)
chr7 (23-209)||(27805713-27805899)


Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 23 - 263
Target Start/End: Original strand, 28551595 - 28551835
Alignment:
Q  23 cacaagaataagttaaaaatgttacctttcagcaatcgatattaagtgcacatctcttaaatagacacaataattaaatattacgcaacttatgttttca 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28551595 cacaagaataagttaaaaatgttacctttcagcaatcgatattaagtgcacatctcttaaatagacacaataattaaatattacgcaacttatgttttca 28551694  T
Q  123 ccactcaaacttgtagcatactttaagaattgagtcattgtattgcttgactgttcatcgatccaagcatgtggactcaaaggtacactcagacttctta 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28551695 ccactcaaacttgtagcatactttaagaattgagtcattgtattgcttgactgttcatcgatccaagcatgtggactcaaaggtacactcagacttctta 28551794  T
Q  223 agctcaaactacttagatcaagttttctccaaagttcagga 263  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  28551795 agctcaaactccttagatcaagttttctccaaagttcagga 28551835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 23 - 263
Target Start/End: Complemental strand, 27813350 - 27813110
Alignment:
Q  23 cacaagaataagttaaaaatgttacctttcagcaatcgatattaagtgcacatctcttaaatagacacaataattaaatattacgcaacttatgttttca 122  Q
    |||||||||||||||| |||||||||||||||||||||| ||||| || |||||||| || |||||| || |||| |||||||  |||||||| ||| |     
T  27813350 cacaagaataagttaacaatgttacctttcagcaatcgagattaaatgtacatctctcaagtagacataacaattgaatattatacaacttatatttccg 27813251  T
Q  123 ccactcaaacttgtagcatactttaagaattgagtcattgtattgcttgactgttcatcgatccaagcatgtggactcaaaggtacactcagacttctta 222  Q
    ||||||||||||| ||||||||| || |||||||||||| | | |||||| || |||||  ||||||||| ||| ||||| |||||| ||| || ||||     
T  27813250 ccactcaaacttgaagcatacttcaaaaattgagtcattttttggcttgaatgatcatccctccaagcatatggtctcaatggtacattcaaacctcttg 27813151  T
Q  223 agctcaaactacttagatcaagttttctccaaagttcagga 263  Q
    || ||||  |||||| ||||||||| |||||||||| ||||    
T  27813150 agttcaatgtacttatatcaagtttgctccaaagttgagga 27813110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 209
Target Start/End: Complemental strand, 27805899 - 27805713
Alignment:
Q  23 cacaagaataagttaaaaatgttacctttcagcaatcgatattaagtgcacatctcttaaatagacacaataattaaatattacgcaacttatgttttca 122  Q
    |||||||||||||||| ||||||||||||||||||||||  |||| || ||||| || || |||||| || |||| ||||||||||||||||| ||| |     
T  27805899 cacaagaataagttaataatgttacctttcagcaatcgaggttaaatgtacatcactcaagtagacataacaattgaatattacgcaacttatatttccg 27805800  T
Q  123 ccactcaaacttgtagcatactttaagaattgagtcattgtattgcttgactgttcatcgatccaagcatgtggactcaaaggtaca 209  Q
    ||||||||||||| ||||||||| |||||||| |||||| | | |||||| ||||||||  ||||||||| ||| ||||| ||||||    
T  27805799 ccactcaaacttgaagcatacttcaagaattgcgtcattttttggcttgagtgttcatccctccaagcatatggtctcaatggtaca 27805713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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