View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0602_high_17 (Length: 279)

Name: NF0602_high_17
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0602_high_17
NF0602_high_17
[»] chr3 (4 HSPs)
chr3 (45-200)||(29822273-29822428)
chr3 (108-192)||(33149850-33149933)
chr3 (121-185)||(9769062-9769126)
chr3 (45-90)||(33149922-33149967)
[»] chr6 (3 HSPs)
chr6 (45-197)||(24546585-24546734)
chr6 (80-200)||(28930335-28930454)
chr6 (45-129)||(9754005-9754087)


Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 45 - 200
Target Start/End: Original strand, 29822273 - 29822428
Alignment:
Q  45 atgaggaccaacatcattgttgtttgcaacaagtagaaaacaaatttttcctctaaagaaagaagaaaccaaattgttgttgttgttgaaattcgattcc 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  29822273 atgaggaccaacatcattgttgtttgcaacaagtagaaaacaaattattcctctaaagaaagaagaaaccaaattgttgtttttgttgaaatttgattcc 29822372  T
Q  145 tattttaatttgaaaaatttgattaacaataaactataacttagattttcttatgt 200  Q
     |||||| |||||||||||||||||||||||||||||| |||||||||| ||||||    
T  29822373 cattttagtttgaaaaatttgattaacaataaactatagcttagatttttttatgt 29822428  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 33149933 - 33149850
Alignment:
Q  108 agaaaccaaattgttgttgttgttgaaattcgattcctattttaatttgaaaaatttgattaacaataaactataacttagattt 192  Q
    ||||||||||||||||||| |||||||||| |||||| |||||| |||| ||||||||||| ||||||||||||| |||||||||    
T  33149933 agaaaccaaattgttgttgctgttgaaatttgattcccattttagtttg-aaaatttgattgacaataaactatagcttagattt 33149850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 9769062 - 9769126
Alignment:
Q  121 ttgttgttgttgaaattcgattcctattttaatttgaaaaatttgattaacaataaactataact 185  Q
    ||||||||||||||||||||||||  ||| | ||||||||||||||||||||||||| |||||||    
T  9769062 ttgttgttgttgaaattcgattccattttgagtttgaaaaatttgattaacaataaattataact 9769126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 33149967 - 33149922
Alignment:
Q  45 atgaggaccaacatcattgttgtttgcaacaagtagaaaacaaatt 90  Q
    ||||||||||||||||||  | ||||||||||||||||| ||||||    
T  33149967 atgaggaccaacatcattactatttgcaacaagtagaaaccaaatt 33149922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 45 - 197
Target Start/End: Original strand, 24546585 - 24546734
Alignment:
Q  45 atgaggaccaacatcattgttgtttgcaacaagtagaaaacaaatttttcctctaaagaaagaagaaaccaaattgttgttgttgttgaaattcgattcc 144  Q
    |||||||| |||| ||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||   |||||||||||||||||| |||||    
T  24546585 atgaggacaaacaccattgatgtttgcaacaagtagaaaacaaattgttcctctaatgaaagaagaaaccaaa---ttgttgttgttgaaattcaattcc 24546681  T
Q  145 tattttaatttgaaaaatttgattaacaataaactataacttagattttctta 197  Q
     |||||| |||||||||||||||||||||||||| ||| ||||||||||||||    
T  24546682 cattttagtttgaaaaatttgattaacaataaaccatagcttagattttctta 24546734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 80 - 200
Target Start/End: Original strand, 28930335 - 28930454
Alignment:
Q  80 gaaaacaaatttttcctctaaagaaagaagaaaccaaattgttgttgttgttgaaattcgattcctattttaatttgaaaaatttgattaacaataaact 179  Q
    |||| |||||| ||||| |||| ||| || ||||||||||||| |||||||||||||| |||||| |||||| ||||||||||||||||||| |||||||    
T  28930335 gaaaccaaattgttcctttaaaaaaaaaa-aaaccaaattgttattgttgttgaaatttgattcccattttagtttgaaaaatttgattaacgataaact 28930433  T
Q  180 ataacttagattttcttatgt 200  Q
    |||| ||||||| ||||||||    
T  28930434 ataagttagattgtcttatgt 28930454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 9754005 - 9754087
Alignment:
Q  45 atgaggaccaacatcattgttgtttgcaacaagtagaaaacaaatttttcctctaaagaaagaagaaaccaaattgttgttgttg 129  Q
    ||||||||||||||||||  || |||||||| ||||||| |||||| |   |||||| |||| ||||||||||||||||||||||    
T  9754005 atgaggaccaacatcattactggttgcaacatgtagaaaccaaattgt--gtctaaaaaaagtagaaaccaaattgttgttgttg 9754087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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