View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0602_high_2 (Length: 500)

Name: NF0602_high_2
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0602_high_2
NF0602_high_2
[»] chr8 (14 HSPs)
chr8 (311-493)||(26624203-26624381)
chr8 (1-116)||(26623893-26624006)
chr8 (183-229)||(26624075-26624121)
chr8 (46-116)||(33561840-33561909)
chr8 (40-115)||(5967535-5967609)
chr8 (183-229)||(25328688-25328734)
chr8 (40-96)||(41636575-41636631)
chr8 (40-115)||(32821769-32821843)
chr8 (183-229)||(21511682-21511728)
chr8 (40-98)||(32178482-32178540)
chr8 (183-229)||(33562017-33562063)
chr8 (185-222)||(788728-788765)
chr8 (40-116)||(11660728-11660804)
chr8 (40-96)||(44400596-44400652)
[»] chr3 (8 HSPs)
chr3 (26-116)||(46552618-46552708)
chr3 (40-116)||(12113464-12113539)
chr3 (40-96)||(29251213-29251269)
chr3 (183-229)||(19680695-19680741)
chr3 (50-116)||(26504900-26504965)
chr3 (183-229)||(30847076-30847122)
chr3 (51-96)||(17578713-17578758)
chr3 (53-116)||(30738637-30738701)
[»] chr4 (4 HSPs)
chr4 (21-116)||(50679981-50680076)
chr4 (21-116)||(35321392-35321489)
chr4 (188-229)||(50679825-50679866)
chr4 (40-96)||(24968597-24968653)
[»] chr7 (9 HSPs)
chr7 (40-116)||(9157614-9157689)
chr7 (40-96)||(30295286-30295342)
chr7 (183-228)||(28606124-28606169)
chr7 (21-96)||(28606564-28606642)
chr7 (34-96)||(48268849-48268911)
chr7 (40-97)||(5277904-5277961)
chr7 (183-228)||(42834703-42834748)
chr7 (40-96)||(24862032-24862088)
chr7 (40-96)||(28336992-28337048)
[»] chr6 (4 HSPs)
chr6 (21-96)||(21381580-21381658)
chr6 (183-229)||(17186751-17186797)
chr6 (183-229)||(20805805-20805851)
chr6 (40-93)||(17186917-17186970)
[»] chr5 (10 HSPs)
chr5 (40-116)||(36977570-36977645)
chr5 (26-92)||(394221-394288)
chr5 (26-116)||(26244321-26244411)
chr5 (50-116)||(10192747-10192812)
chr5 (40-116)||(15936885-15936959)
chr5 (40-116)||(5841480-5841555)
chr5 (183-223)||(32270454-32270494)
chr5 (183-229)||(394403-394449)
chr5 (188-229)||(5841320-5841361)
chr5 (44-96)||(28084943-28084996)
[»] chr2 (13 HSPs)
chr2 (40-116)||(33891795-33891870)
chr2 (38-116)||(41399004-41399081)
chr2 (40-96)||(3330832-3330888)
chr2 (40-116)||(6201266-6201341)
chr2 (40-116)||(7634603-7634678)
chr2 (40-116)||(21200203-21200278)
chr2 (40-116)||(21202423-21202498)
chr2 (40-116)||(41670239-41670314)
chr2 (183-229)||(32493540-32493586)
chr2 (53-115)||(32493697-32493759)
chr2 (40-96)||(5998034-5998090)
chr2 (40-96)||(28176208-28176264)
chr2 (188-228)||(41399199-41399239)
[»] chr1 (11 HSPs)
chr1 (40-96)||(36699943-36699999)
chr1 (40-96)||(36716047-36716103)
chr1 (40-116)||(43413496-43413571)
chr1 (40-115)||(34331481-34331555)
chr1 (183-229)||(6492377-6492423)
chr1 (40-96)||(13573086-13573142)
chr1 (50-113)||(47792678-47792741)
chr1 (183-229)||(12880298-12880344)
chr1 (40-96)||(29152971-29153027)
chr1 (40-96)||(33015134-33015190)
chr1 (40-96)||(51161977-51162033)
[»] scaffold0027 (1 HSPs)
scaffold0027 (50-111)||(116823-116883)
[»] scaffold1505 (1 HSPs)
scaffold1505 (183-229)||(889-935)


Alignment Details
Target: chr8 (Bit Score: 130; Significance: 4e-67; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 311 - 493
Target Start/End: Original strand, 26624203 - 26624381
Alignment:
Q  311 ggcacatagaaagtcatttagctatctcgctaaattaaaagtgtttatatgtatgtatgtatgtgataggatgtgttattgtgagagatgagagtattat 410  Q
    |||||||||||||||||||| |||||||||| ||||| |||||||||||||    ||||||||| |||||| |||||||||||||||||||||||| |||    
T  26624203 ggcacatagaaagtcatttaactatctcgctcaattagaagtgtttatatg----tatgtatgttataggaggtgttattgtgagagatgagagtagtat 26624298  T
Q  411 ataataaccatccaattaaaataaatggtggagatcttattttgattaaggtgtaccttcgatcccttgtattcttcatctca 493  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||    
T  26624299 ataataaccatccaattaaaataaatggtggagatcttacttttattaaggtgtgccttcgatcccttgtattcttcatctca 26624381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 26623893 - 26624006
Alignment:
Q  1 agattttatttttct-gagagaagttaaaaaagattttaaattcattaatttaaatattcattgttggagattttatatagacaaaatcacatatttatt 99  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  26623893 agattttattttttttgagagaagttaaaaaagattttaaattcattaatttaaatattcattgttgga---tttatatagacaaaatcacatatttatt 26623989  T
Q  100 tttaaatgacatctttc 116  Q
    || ||||||||||||||    
T  26623990 ttaaaatgacatctttc 26624006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 26624075 - 26624121
Alignment:
Q  183 cattgtaagataatatattcaaacaaatttttcatttgaagctttcc 229  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||    
T  26624075 cattgtaagataatatattcaaacaaatctttcatttgaagttttcc 26624121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 33561840 - 33561909
Alignment:
Q  46 taatttaaatattcattgttggagattttatatagacaaaatcacatatttatttttaaatgacatctttc 116  Q
    ||||| |||||||||||||| ||||||||||||||  |||||||||||||| |||  ||||||||||||||    
T  33561840 taattcaaatattcattgttcgagattttatatagtaaaaatcacatattt-tttcaaaatgacatctttc 33561909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 5967609 - 5967535
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatatttatttttaaatgacatcttt 115  Q
    ||||||||| |||||||| ||||||| ||||||||||||||  |||||||| ||||| |||  |||||||||||||    
T  5967609 attcattaacttaaatatacattgttcgagattttatatagtaaaaatcacctattt-tttcaaaatgacatcttt 5967535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 25328734 - 25328688
Alignment:
Q  183 cattgtaagataatatattcaaacaaatttttcatttgaagctttcc 229  Q
    |||| ||||||||  ||||||||||||||||||||||||||||||||    
T  25328734 cattttaagataagttattcaaacaaatttttcatttgaagctttcc 25328688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 41636631 - 41636575
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatattt 96  Q
    ||||| ||| |||||||||||||||| ||||||||| ||||  ||||||||||||||    
T  41636631 attcactaacttaaatattcattgttcgagattttagatagtaaaaatcacatattt 41636575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 32821843 - 32821769
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatatttatttttaaatgacatcttt 115  Q
    ||||| ||| |||||||||||||||| |||||||||  |||  |||||||||||||| |||  |||||||||||||    
T  32821843 attcactaacttaaatattcattgttcgagattttacttagtaaaaatcacatattt-tttcaaaatgacatcttt 32821769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 21511682 - 21511728
Alignment:
Q  183 cattgtaagataatatattcaaacaaatttttcatttgaagctttcc 229  Q
    |||| ||||||||| ||||||||| || |||||||||||||||||||    
T  21511682 cattttaagataatctattcaaacgaacttttcatttgaagctttcc 21511728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 32178540 - 32178482
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatatttat 98  Q
    ||||| ||||| |||||||||||||| |||||||||  |||  ||||||||||||||||    
T  32178540 attcactaattgaaatattcattgtttgagattttacgtagtaaaaatcacatatttat 32178482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 33562017 - 33562063
Alignment:
Q  183 cattgtaagataatatattcaaacaaatttttcatttgaagctttcc 229  Q
    |||| |||||||| |||||||||| ||||||||||||||| ||||||    
T  33562017 cattttaagataagatattcaaacgaatttttcatttgaaactttcc 33562063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 788728 - 788765
Alignment:
Q  185 ttgtaagataatatattcaaacaaatttttcatttgaa 222  Q
    |||||||||||  |||||||||||||||||||||||||    
T  788728 ttgtaagataagttattcaaacaaatttttcatttgaa 788765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 11660804 - 11660728
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatatttatttttaaatgacatctttc 116  Q
    ||||| ||| ||||||||| ||| || ||||||||| ||||  |||| ||||||||| |||  ||||||||||||||    
T  11660804 attcactaacttaaatatttattttttgagattttacatagtaaaaagcacatatttttttcaaaatgacatctttc 11660728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 44400652 - 44400596
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatattt 96  Q
    ||||| ||| ||||||||||| |||| |||||||||||||   ||||||||||||||    
T  44400652 attcactaacttaaatattcactgttagagattttatataataaaaatcacatattt 44400596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 26 - 116
Target Start/End: Original strand, 46552618 - 46552708
Alignment:
Q  26 aaaaaagattttaa-attcattaatttaaatattcattgttggagattttatatagacaaaatcacatatttatttttaaatgacatctttc 116  Q
    |||| ||||||||| ||||||||| ||||||||||||| || ||||||||||||||  |||||||||||||| |||  ||||||||||||||    
T  46552618 aaaagagattttaacattcattaacttaaatattcattattcgagattttatatagtaaaaatcacatattt-tttcaaaatgacatctttc 46552708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 12113539 - 12113464
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatatttatttttaaatgacatctttc 116  Q
    ||||| ||| |||||||||||||| | ||||||||| ||||  |||||||||||||| |||  ||||||||||||||    
T  12113539 attcactaacttaaatattcattgctcgagattttacatagtaaaaatcacatattt-tttcaaaatgacatctttc 12113464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 29251213 - 29251269
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatattt 96  Q
    ||||||||| |||||||||||||||| ||||||||| ||||  || |||||||||||    
T  29251213 attcattaacttaaatattcattgttagagattttacatagtaaagatcacatattt 29251269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 19680741 - 19680695
Alignment:
Q  183 cattgtaagataatatattcaaacaaatttttcatttgaagctttcc 229  Q
    |||| ||||||||  |||||||||||||||||||||||||| |||||    
T  19680741 cattttaagataaactattcaaacaaatttttcatttgaagttttcc 19680695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 26504900 - 26504965
Alignment:
Q  50 ttaaatattcattgttggagattttatatagacaaaatcacatatttatttttaaatgacatctttc 116  Q
    |||||||||||||||| ||||||||| | ||  |||||||||||||| |||  ||||||||||||||    
T  26504900 ttaaatattcattgttcgagattttacagagtaaaaatcacatattt-tttcaaaatgacatctttc 26504965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 30847076 - 30847122
Alignment:
Q  183 cattgtaagataatatattcaaacaaatttttcatttgaagctttcc 229  Q
    |||| ||||||||  ||||||||||||||||||||||||| ||||||    
T  30847076 cattttaagataagttattcaaacaaatttttcatttgaaactttcc 30847122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 17578713 - 17578758
Alignment:
Q  51 taaatattcattgttggagattttatatagacaaaatcacatattt 96  Q
    ||||||||||||||| ||||||||| ||||  ||||||||||||||    
T  17578713 taaatattcattgttcgagattttacatagtaaaaatcacatattt 17578758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 30738637 - 30738701
Alignment:
Q  53 aatattcattgttggagattttatatagacaaaatcacatatttatttt-taaatgacatctttc 116  Q
    ||||| ||||||| ||||||||| ||||  |||||||||||||| ||||  ||||||||||||||    
T  30738637 aatatccattgtttgagattttacatagtaaaaatcacatattttttttcaaaatgacatctttc 30738701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 50680076 - 50679981
Alignment:
Q  21 aagttaaaaaagattttaa-attcattaatttaaatattcattgttggagattttatatagacaaaatcacatatttatttttaaatgacatctttc 116  Q
    ||||||||||||||||| | ||||| ||| |||||||||||| ||| ||||||||| ||||  |||||||||||||| |||  ||||||||||||||    
T  50680076 aagttaaaaaagattttgacattcactaacttaaatattcatagttcgagattttacatagtaaaaatcacatattt-tttcaaaatgacatctttc 50679981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 35321392 - 35321489
Alignment:
Q  21 aagttaaaaaagat--tttaa-attcattaatttaaatattcattgttggagattttatatagacaaaatcacatatttatttttaaatgacatctttc 116  Q
    ||||||||||||||  ||||| ||||| ||| |||||||||||||||| ||||||||| || |  |||||||||||||| |||| ||||||||||||||    
T  35321392 aagttaaaaaagatattttaacattcactaagttaaatattcattgttcgagattttacatggtaaaaatcacatattt-ttttaaaatgacatctttc 35321489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 50679866 - 50679825
Alignment:
Q  188 taagataatatattcaaacaaatttttcatttgaagctttcc 229  Q
    ||||||||  ||||||||||||||||||||||||||||||||    
T  50679866 taagataaactattcaaacaaatttttcatttgaagctttcc 50679825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 24968597 - 24968653
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatattt 96  Q
    ||||| ||| |||||||||||||||| ||||||||| ||||  ||||||||||||||    
T  24968597 attcactaacttaaatattcattgttcgagattttacatagtaaaaatcacatattt 24968653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 9157614 - 9157689
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatatttatttttaaatgacatctttc 116  Q
    ||||| ||| |||||||||||||||| ||||||||| ||||  |||||||||||||| |||  ||||||||||||||    
T  9157614 attcactaacttaaatattcattgtttgagattttacatagtaaaaatcacatattt-tttcaaaatgacatctttc 9157689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 30295342 - 30295286
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatattt 96  Q
    |||||||||||||||||||||||||| | ||||||| ||||  ||||||||||||||    
T  30295342 attcattaatttaaatattcattgttagtgattttacatagtaaaaatcacatattt 30295286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 28606169 - 28606124
Alignment:
Q  183 cattgtaagataatatattcaaacaaatttttcatttgaagctttc 228  Q
    |||| ||||||||  |||||||||||||||||||||||||||||||    
T  28606169 cattttaagataaactattcaaacaaatttttcatttgaagctttc 28606124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 28606564 - 28606642
Alignment:
Q  21 aagttaaaaaaga---ttttaaattcattaatttaaatattcattgttggagattttatatagacaaaatcacatattt 96  Q
    |||||||||||||   ||||| |||||  || |||||||||||||||| ||||||||| ||||  ||||||||||||||    
T  28606564 aagttaaaaaagagatttttacattcacgaacttaaatattcattgttcgagattttacatagtaaaaatcacatattt 28606642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 48268911 - 48268849
Alignment:
Q  34 ttttaaattcattaatttaaatattcattgttggagattttatatagacaaaatcacatattt 96  Q
    ||||| ||||| ||| |||||||||||||||| ||||||||| ||||  ||||||| ||||||    
T  48268911 ttttacattcactaacttaaatattcattgtttgagattttacatagtaaaaatcatatattt 48268849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 5277961 - 5277904
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatattta 97  Q
    ||||| ||||||||||| |||||||| ||||||||| || |  |||||||||||||||    
T  5277961 attcactaatttaaataatcattgtttgagattttacattgtaaaaatcacatattta 5277904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 42834703 - 42834748
Alignment:
Q  183 cattgtaagataatatattcaaacaaatttttcatttgaagctttc 228  Q
    |||| ||||||||  ||||||||| |||||||||||||||||||||    
T  42834703 cattttaagataaattattcaaacgaatttttcatttgaagctttc 42834748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 24862088 - 24862032
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatattt 96  Q
    ||||| ||| |||||||||||||||| || |||||| ||||  ||||||||||||||    
T  24862088 attcactaacttaaatattcattgttagatattttacatagtaaaaatcacatattt 24862032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 28337048 - 28336992
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatattt 96  Q
    ||||| ||| ||||||||||||||||  |||||||| ||||  ||||||||||||||    
T  28337048 attcactaacttaaatattcattgttcaagattttacatagtaaaaatcacatattt 28336992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 21381658 - 21381580
Alignment:
Q  21 aagttaaaaaaga---ttttaaattcattaatttaaatattcattgttggagattttatatagacaaaatcacatattt 96  Q
    |||||||||||||   ||||| ||||| |||||||||||||||||||| || |||||| ||||  ||||||||||||||    
T  21381658 aagttaaaaaagagatttttacattcactaatttaaatattcattgttcgaaattttacatagtaaaaatcacatattt 21381580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 17186797 - 17186751
Alignment:
Q  183 cattgtaagataatatattcaaacaaatttttcatttgaagctttcc 229  Q
    |||| ||||||||  |||||||||| |||||||||||||||||||||    
T  17186797 cattttaagataagctattcaaacagatttttcatttgaagctttcc 17186751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 20805851 - 20805805
Alignment:
Q  183 cattgtaagataatatattcaaacaaatttttcatttgaagctttcc 229  Q
    |||| ||||||||  || |||||||||||||||||||||||||||||    
T  20805851 cattttaagataagctactcaaacaaatttttcatttgaagctttcc 20805805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 17186970 - 17186917
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacata 93  Q
    ||||| ||| |||||||||||||||| ||||||||| ||||  |||||||||||    
T  17186970 attcactaacttaaatattcattgttcgagattttacatagtaaaaatcacata 17186917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 36977645 - 36977570
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatatttatttttaaatgacatctttc 116  Q
    ||||| ||| |||||||||||||||| ||||||||| ||||  |||||||||||||| |||  ||||||||||||||    
T  36977645 attcactaacttaaatattcattgttcgagattttacatagtaaaaatcacatattt-tttcaaaatgacatctttc 36977570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 394221 - 394288
Alignment:
Q  26 aaaaaagattttaa-attcattaatttaaatattcattgttggagattttatatagacaaaatcacat 92  Q
    |||||||||||||| ||||||||| |||||||||||||||| || |||||| ||||  ||||||||||    
T  394221 aaaaaagattttaacattcattaacttaaatattcattgtttgacattttacatagtaaaaatcacat 394288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 116
Target Start/End: Original strand, 26244321 - 26244411
Alignment:
Q  26 aaaaaagattttaa-attcattaatttaaatattcattgttggagattttatatagacaaaatcacatatttatttttaaatgacatctttc 116  Q
    |||||||||||||| |||||  || |||||||||||||||| ||||||||| ||||  ||||||| |||||| |||  ||||||||||||||    
T  26244321 aaaaaagattttaacattcaccaacttaaatattcattgttcgagattttacataggaaaaatcatatattt-tttcaaaatgacatctttc 26244411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 10192812 - 10192747
Alignment:
Q  50 ttaaatattcattgttggagattttatatagacaaaatcacatatttatttttaaatgacatctttc 116  Q
    |||||||||||||||| ||||||||| ||||  |||||||||||||| |||  ||||||||||||||    
T  10192812 ttaaatattcattgttcgagattttacatagtaaaaatcacatattt-tttcaaaatgacatctttc 10192747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 15936885 - 15936959
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatatttatttttaaatgacatctttc 116  Q
    ||||||||| |||||||||||||||| ||||||||| ||||  ||||| |||||||  |||| ||||||||| ||||    
T  15936885 attcattaacttaaatattcattgtttgagattttacatagtaaaaattacatatt--ttttcaaatgacatttttc 15936959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 5841555 - 5841480
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatatttatttttaaatgacatctttc 116  Q
    ||||| ||| |||||||||||||||| ||||||||| ||||  ||||||||| |||| |||  ||||||||||||||    
T  5841555 attcactaacttaaatattcattgttcgagattttacatagtaaaaatcacacattt-tttcaaaatgacatctttc 5841480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 32270454 - 32270494
Alignment:
Q  183 cattgtaagataatatattcaaacaaatttttcatttgaag 223  Q
    |||| |||||||| |||||||||||||||||||||||||||    
T  32270454 cattttaagataagatattcaaacaaatttttcatttgaag 32270494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 394403 - 394449
Alignment:
Q  183 cattgtaagataatatattcaaacaaatttttcatttgaagctttcc 229  Q
    |||| ||||||||  |||||||||| |||||||||||||||||||||    
T  394403 cattttaagataagctattcaaacagatttttcatttgaagctttcc 394449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 5841361 - 5841320
Alignment:
Q  188 taagataatatattcaaacaaatttttcatttgaagctttcc 229  Q
    ||||||||  |||||||||| |||||||||||||||||||||    
T  5841361 taagataaactattcaaacatatttttcatttgaagctttcc 5841320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 28084943 - 28084996
Alignment:
Q  44 attaatttaaatattcattgttggagattttatataga-caaaatcacatattt 96  Q
    ||||| |||||||||||||||| ||||||||| ||| | |||||||||||||||    
T  28084943 attaacttaaatattcattgttagagattttaaataaatcaaaatcacatattt 28084996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 33891870 - 33891795
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatatttatttttaaatgacatctttc 116  Q
    ||||| ||| |||||||||||||||| ||||||||| |||   |||||||||||||| |||| ||||||||||||||    
T  33891870 attcactaacttaaatattcattgttcgagattttacataataaaaatcacatattt-ttttaaaatgacatctttc 33891795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 41399004 - 41399081
Alignment:
Q  38 aaattcattaatttaaatattcattgttggagattttatatagacaaaatcacatatttatttttaaatgacatctttc 116  Q
    ||||||| ||| |||||||||||||||| ||||||||| ||||  |||| ||||||||| |||  ||||||||||||||    
T  41399004 aaattcactaacttaaatattcattgttcgagattttacatagtaaaaaccacatattt-tttcaaaatgacatctttc 41399081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 3330888 - 3330832
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatattt 96  Q
    ||||| ||| ||||||||||||| || ||||||||||||||  ||||||||||||||    
T  3330888 attcactaacttaaatattcattattcgagattttatatagtaaaaatcacatattt 3330832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 6201266 - 6201341
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatatttatttttaaatgacatctttc 116  Q
    ||||| ||| |||||| ||||||||| ||||||||| ||||  |||||||||||||| |||  ||||||||||||||    
T  6201266 attcactaacttaaatgttcattgttcgagattttacatagtaaaaatcacatattt-tttcaaaatgacatctttc 6201341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 7634603 - 7634678
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatatttatttttaaatgacatctttc 116  Q
    ||||| ||| |||||||||||||||| ||||||||| ||||  |||| ||||||||| |||  ||||||||||||||    
T  7634603 attcactaacttaaatattcattgtttgagattttacatagtaaaaagcacatattt-tttcaaaatgacatctttc 7634678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 21200278 - 21200203
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatatttatttttaaatgacatctttc 116  Q
    ||||| ||| || ||||||||||||| ||||||||| ||||  |||||||||||||| |||  ||||||||||||||    
T  21200278 attcactaacttgaatattcattgttcgagattttacatagtaaaaatcacatattt-tttcaaaatgacatctttc 21200203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 21202423 - 21202498
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatatttatttttaaatgacatctttc 116  Q
    ||||| ||| || ||||||||||||| ||||||||| ||||  |||||||||||||| |||  ||||||||||||||    
T  21202423 attcactaacttgaatattcattgttcgagattttacatagtaaaaatcacatattt-tttcaaaatgacatctttc 21202498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 41670314 - 41670239
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatatttatttttaaatgacatctttc 116  Q
    ||||||||| |||||||||||||||| || |||||| |||   |||||||||||||| |||| ||||||||| ||||    
T  41670314 attcattaacttaaatattcattgtttgaaattttacataataaaaatcacatattt-ttttaaaatgacatatttc 41670239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 32493586 - 32493540
Alignment:
Q  183 cattgtaagataatatattcaaacaaatttttcatttgaagctttcc 229  Q
    |||| ||||||||  |||||||||||||||||| |||||||||||||    
T  32493586 cattttaagataaactattcaaacaaatttttcttttgaagctttcc 32493540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 32493759 - 32493697
Alignment:
Q  53 aatattcattgttggagattttatatagacaaaatcacatatttatttttaaatgacatcttt 115  Q
    ||||||||||||| ||||||||| ||||  ||||| |||||||| |||  |||||||||||||    
T  32493759 aatattcattgttcgagattttacatagtaaaaattacatatttttttcaaaatgacatcttt 32493697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 5998090 - 5998034
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatattt 96  Q
    ||||| ||| |||||||||||||||| ||||||||| ||||  ||||| ||||||||    
T  5998090 attcactaacttaaatattcattgttcgagattttacatagtaaaaattacatattt 5998034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 28176208 - 28176264
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatattt 96  Q
    ||||||||| |||||||||||||||| ||||||||| || |   |||||||||||||    
T  28176208 attcattaacttaaatattcattgttcgagattttacatggtataaatcacatattt 28176264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 41399199 - 41399239
Alignment:
Q  188 taagataatatattcaaacaaatttttcatttgaagctttc 228  Q
    ||||||||  |||||||||| ||||||||||||||||||||    
T  41399199 taagataaactattcaaacagatttttcatttgaagctttc 41399239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 36699943 - 36699999
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatattt 96  Q
    ||||| |||||||||||||||||||| ||||||||| ||||  ||||||||||||||    
T  36699943 attcactaatttaaatattcattgttcgagattttacatagtaaaaatcacatattt 36699999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 36716047 - 36716103
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatattt 96  Q
    ||||| |||||||||||||||||||| ||||||||| ||||  ||||||||||||||    
T  36716047 attcactaatttaaatattcattgttcgagattttacatagtaaaaatcacatattt 36716103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 43413571 - 43413496
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatatttatttttaaatgacatctttc 116  Q
    ||||| ||| |||||||||||||||| ||||||||| | ||  |||||||||||||| |||| ||||||||||||||    
T  43413571 attcactaacttaaatattcattgtttgagattttacacagtaaaaatcacatattt-ttttaaaatgacatctttc 43413496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 34331481 - 34331555
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatatttatttttaaatgacatcttt 115  Q
    ||||| ||| |||||||||||||||| ||||||||| ||||  |||||||||||||| |||  |||||||||||||    
T  34331481 attcactaacttaaatattcattgttagagattttacatagtaaaaatcacatattt-tttcaaaatgacatcttt 34331555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 6492423 - 6492377
Alignment:
Q  183 cattgtaagataatatattcaaacaaatttttcatttgaagctttcc 229  Q
    |||| ||||||||| |||||||||||||||||||||| |||||||||    
T  6492423 cattttaagataatttattcaaacaaatttttcattttaagctttcc 6492377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 13573086 - 13573142
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatattt 96  Q
    ||||| ||| |||||||||||||||| ||||||||| ||||  ||||||||||||||    
T  13573086 attcactaacttaaatattcattgttcgagattttaaatagtaaaaatcacatattt 13573142  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 47792741 - 47792678
Alignment:
Q  50 ttaaatattcattgttggagattttatatagacaaaatcacatatttatttttaaatgacatct 113  Q
    |||||||||||||||| ||||||||| ||||  ||||||| |||||| |||  |||||||||||    
T  47792741 ttaaatattcattgttcgagattttacatagtaaaaatcaaatatttttttcaaaatgacatct 47792678  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 12880344 - 12880298
Alignment:
Q  183 cattgtaagataatatattcaaacaaatttttcatttgaagctttcc 229  Q
    |||| ||||||||  ||||||||||||||||||||||||| ||||||    
T  12880344 cattttaagataaattattcaaacaaatttttcatttgaaactttcc 12880298  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 29153027 - 29152971
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatattt 96  Q
    ||||| ||| ||| |||||||||||| ||||||||| ||||  ||||||||||||||    
T  29153027 attcactaacttatatattcattgtttgagattttacatagtaaaaatcacatattt 29152971  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 33015134 - 33015190
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatattt 96  Q
    ||||||||| |||||| ||||||||| ||||||||  ||||  ||||||||||||||    
T  33015134 attcattaacttaaatgttcattgttcgagattttgcatagtaaaaatcacatattt 33015190  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 51162033 - 51161977
Alignment:
Q  40 attcattaatttaaatattcattgttggagattttatatagacaaaatcacatattt 96  Q
    ||||| ||| |||||||||||||||| ||||||| | ||||  ||||||||||||||    
T  51162033 attcactaacttaaatattcattgttcgagatttaacatagtaaaaatcacatattt 51161977  T

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Target: scaffold0027 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 116883 - 116823
Alignment:
Q  50 ttaaatattcattgttggagattttatatagacaaaatcacatatttatttttaaatgacat 111  Q
    |||||||||||||||| |||||||||||| |  |||||||||||||| |||| |||||||||    
T  116883 ttaaatattcattgttcgagattttatatggtaaaaatcacatattt-ttttaaaatgacat 116823  T

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Target: scaffold1505 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1505
Description:

Target: scaffold1505; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 889 - 935
Alignment:
Q  183 cattgtaagataatatattcaaacaaatttttcatttgaagctttcc 229  Q
    |||| ||||||||  ||||||||||||||||||||||||| ||||||    
T  889 cattttaagataagttattcaaacaaatttttcatttgaaactttcc 935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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