View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0602_high_20 (Length: 251)

Name: NF0602_high_20
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0602_high_20
NF0602_high_20
[»] chr2 (22 HSPs)
chr2 (28-249)||(25374784-25375005)
chr2 (46-159)||(22289422-22289535)
chr2 (28-158)||(16770835-16770965)
chr2 (28-158)||(24800237-24800367)
chr2 (28-158)||(27618754-27618884)
chr2 (28-158)||(27622781-27622911)
chr2 (34-159)||(18993209-18993334)
chr2 (28-159)||(112696-112827)
chr2 (28-159)||(13974526-13974657)
chr2 (48-159)||(25138012-25138123)
chr2 (173-248)||(18992130-18992205)
chr2 (166-248)||(25136951-25137033)
chr2 (40-108)||(23013143-23013211)
chr2 (177-243)||(24173316-24173382)
chr2 (177-238)||(25147755-25147816)
chr2 (197-248)||(22048508-22048559)
chr2 (197-248)||(27623918-27623969)
chr2 (70-140)||(16004-16074)
chr2 (70-140)||(25359501-25359571)
chr2 (176-218)||(16771954-16771996)
chr2 (38-124)||(24370253-24370339)
chr2 (43-140)||(20135-20232)
[»] chr6 (26 HSPs)
chr6 (28-159)||(25776013-25776144)
chr6 (28-135)||(8736407-8736514)
chr6 (28-158)||(20021034-20021164)
chr6 (28-158)||(20165386-20165516)
chr6 (28-159)||(2648462-2648593)
chr6 (28-159)||(18279516-18279647)
chr6 (28-158)||(22772036-22772166)
chr6 (40-159)||(35244407-35244526)
chr6 (28-158)||(24860143-24860272)
chr6 (35-159)||(19562657-19562781)
chr6 (166-249)||(25777113-25777196)
chr6 (173-248)||(2653187-2653262)
chr6 (48-140)||(23613713-23613805)
chr6 (173-248)||(19561597-19561672)
chr6 (177-248)||(22596952-22597023)
chr6 (68-159)||(11234624-11234715)
chr6 (177-248)||(23617347-23617418)
chr6 (176-248)||(8727859-8727931)
chr6 (176-248)||(16160071-16160143)
chr6 (38-140)||(23522692-23522794)
chr6 (28-140)||(18628620-18628732)
chr6 (205-248)||(11216303-11216346)
chr6 (197-248)||(24859083-24859134)
chr6 (70-140)||(17792772-17792842)
chr6 (73-140)||(22600159-22600226)
chr6 (176-218)||(20020139-20020181)
[»] chr8 (19 HSPs)
chr8 (28-159)||(22286191-22286322)
chr8 (28-159)||(22094429-22094560)
chr8 (28-158)||(8309656-8309786)
chr8 (28-140)||(21822561-21822673)
chr8 (28-159)||(18400478-18400609)
chr8 (28-158)||(8327749-8327879)
chr8 (48-159)||(22827122-22827231)
chr8 (40-159)||(25468502-25468621)
chr8 (42-159)||(22038416-22038533)
chr8 (28-159)||(21951255-21951386)
chr8 (166-248)||(22287301-22287383)
chr8 (173-247)||(22828218-22828292)
chr8 (176-248)||(21952374-21952446)
chr8 (181-248)||(18401592-18401659)
chr8 (177-248)||(22359716-22359787)
chr8 (176-248)||(22037357-22037429)
chr8 (197-248)||(8310795-8310846)
chr8 (70-140)||(19292258-19292328)
chr8 (70-140)||(23219418-23219488)
[»] chr3 (32 HSPs)
chr3 (28-159)||(14070457-14070588)
chr3 (34-159)||(13666219-13666344)
chr3 (28-159)||(13511260-13511391)
chr3 (28-140)||(15633829-15633941)
chr3 (28-155)||(13201583-13201710)
chr3 (28-158)||(10142246-10142376)
chr3 (28-158)||(11879241-11879371)
chr3 (28-159)||(806-937)
chr3 (28-158)||(12191726-12191856)
chr3 (28-158)||(12198370-12198500)
chr3 (28-158)||(13192293-13192423)
chr3 (28-158)||(15640262-15640392)
chr3 (28-140)||(10165097-10165209)
chr3 (28-140)||(13141095-13141207)
chr3 (72-159)||(12159707-12159794)
chr3 (171-248)||(14069395-14069472)
chr3 (175-248)||(14454842-14454915)
chr3 (176-248)||(13075780-13075852)
chr3 (80-158)||(13604193-13604271)
chr3 (90-140)||(14455921-14455971)
chr3 (199-248)||(13140017-13140066)
chr3 (183-244)||(15632767-15632828)
chr3 (197-248)||(13191233-13191284)
chr3 (181-248)||(17452220-17452287)
chr3 (70-140)||(22168706-22168776)
chr3 (197-248)||(10143386-10143437)
chr3 (176-214)||(10164053-10164091)
chr3 (70-140)||(10606929-10606999)
chr3 (176-218)||(12380964-12381006)
chr3 (70-140)||(20151869-20151939)
chr3 (183-248)||(12190666-12190731)
chr3 (176-220)||(13200545-13200589)
[»] scaffold0091 (3 HSPs)
scaffold0091 (28-159)||(24230-24361)
scaffold0091 (28-159)||(28427-28558)
scaffold0091 (27-159)||(48244-48376)
[»] scaffold0042 (3 HSPs)
scaffold0042 (28-159)||(16186-16317)
scaffold0042 (45-157)||(55422-55534)
scaffold0042 (177-248)||(54413-54484)
[»] scaffold0078 (1 HSPs)
scaffold0078 (28-159)||(25688-25819)
[»] chr7 (25 HSPs)
chr7 (40-159)||(12736855-12736974)
chr7 (28-159)||(16470404-16470535)
chr7 (28-158)||(13669024-13669154)
chr7 (34-159)||(11966984-11967109)
chr7 (28-158)||(18598218-18598348)
chr7 (46-158)||(18275230-18275342)
chr7 (28-159)||(13653192-13653323)
chr7 (28-159)||(16527195-16527326)
chr7 (28-159)||(12388171-12388302)
chr7 (173-248)||(12737961-12738036)
chr7 (173-248)||(20104558-20104633)
chr7 (177-248)||(13372621-13372692)
chr7 (177-248)||(16528317-16528388)
chr7 (176-248)||(16469348-16469420)
chr7 (177-248)||(13654261-13654332)
chr7 (177-248)||(16764856-16764927)
chr7 (197-248)||(18276323-18276374)
chr7 (70-140)||(543876-543946)
chr7 (70-140)||(8786060-8786130)
chr7 (70-140)||(14546831-14546901)
chr7 (70-140)||(16329625-16329695)
chr7 (70-140)||(23511444-23511514)
chr7 (176-220)||(11958702-11958746)
chr7 (176-218)||(13670130-13670172)
chr7 (176-218)||(18597191-18597233)
[»] scaffold1589 (1 HSPs)
scaffold1589 (28-159)||(1413-1544)
[»] chr5 (26 HSPs)
chr5 (28-159)||(30768027-30768158)
chr5 (28-158)||(16102991-16103121)
chr5 (28-159)||(20443100-20443231)
chr5 (28-158)||(20617349-20617479)
chr5 (28-158)||(24968098-24968228)
chr5 (28-159)||(22322356-22322487)
chr5 (28-159)||(25121095-25121226)
chr5 (28-159)||(25180186-25180317)
chr5 (28-159)||(26774198-26774329)
chr5 (173-248)||(21384577-21384652)
chr5 (177-248)||(21274444-21274515)
chr5 (28-158)||(21383461-21383591)
chr5 (183-248)||(24967038-24967103)
chr5 (212-248)||(25120033-25120069)
chr5 (212-248)||(25179123-25179159)
chr5 (197-248)||(20618488-20618539)
chr5 (70-140)||(18068642-18068712)
chr5 (70-140)||(20600223-20600293)
chr5 (70-140)||(20606520-20606590)
chr5 (70-140)||(20612839-20612909)
chr5 (70-140)||(20795138-20795208)
chr5 (97-139)||(21275525-21275567)
chr5 (70-140)||(21284632-21284702)
chr5 (70-140)||(22943612-22943682)
chr5 (70-140)||(24216189-24216259)
chr5 (108-140)||(21277042-21277074)
[»] chr1 (14 HSPs)
chr1 (28-159)||(19787014-19787145)
chr1 (28-158)||(21803601-21803731)
chr1 (28-159)||(23500548-23500679)
chr1 (28-158)||(22842910-22843040)
chr1 (46-159)||(20232725-20232838)
chr1 (28-159)||(52952708-52952839)
chr1 (28-138)||(8952333-8952443)
chr1 (173-248)||(8648014-8648089)
chr1 (177-248)||(52951646-52951717)
chr1 (173-248)||(8951311-8951386)
chr1 (183-248)||(20233832-20233897)
chr1 (65-140)||(19878872-19878947)
chr1 (70-140)||(20071691-20071761)
chr1 (176-220)||(22466848-22466892)
[»] scaffold0112 (2 HSPs)
scaffold0112 (28-158)||(6486-6616)
scaffold0112 (202-248)||(7630-7676)
[»] chr4 (13 HSPs)
chr4 (28-158)||(2043-2173)
chr4 (27-140)||(6444-6557)
chr4 (28-159)||(15303215-15303346)
chr4 (28-158)||(22106148-22106278)
chr4 (28-159)||(15249520-15249651)
chr4 (28-159)||(15264990-15265121)
chr4 (176-248)||(15250638-15250710)
chr4 (94-159)||(9193395-9193460)
chr4 (176-248)||(15304297-15304369)
chr4 (177-248)||(15858417-15858488)
chr4 (177-248)||(16678680-16678751)
chr4 (38-140)||(11921234-11921336)
chr4 (176-218)||(5393-5435)
[»] scaffold0031 (1 HSPs)
scaffold0031 (34-159)||(25031-25156)
[»] scaffold0004 (3 HSPs)
scaffold0004 (34-159)||(368261-368386)
scaffold0004 (177-248)||(21781-21852)
scaffold0004 (176-220)||(367227-367271)
[»] scaffold0630 (2 HSPs)
scaffold0630 (28-159)||(6629-6760)
scaffold0630 (28-159)||(463-594)
[»] scaffold0506 (3 HSPs)
scaffold0506 (46-159)||(6583-6696)
scaffold0506 (177-248)||(10382-10453)
scaffold0506 (177-248)||(5915-5986)
[»] scaffold0012 (1 HSPs)
scaffold0012 (34-159)||(187408-187533)
[»] scaffold0346 (2 HSPs)
scaffold0346 (28-159)||(1226-1357)
scaffold0346 (177-243)||(7307-7373)
[»] scaffold0079 (1 HSPs)
scaffold0079 (28-159)||(2386-2517)
[»] scaffold0634 (2 HSPs)
scaffold0634 (28-159)||(1544-1675)
scaffold0634 (212-248)||(607-643)
[»] scaffold0164 (2 HSPs)
scaffold0164 (65-158)||(34698-34791)
scaffold0164 (176-218)||(35779-35821)
[»] scaffold0535 (1 HSPs)
scaffold0535 (46-139)||(6946-7039)
[»] scaffold1058 (2 HSPs)
scaffold1058 (177-248)||(781-852)
scaffold1058 (28-140)||(1861-1973)
[»] scaffold0117 (1 HSPs)
scaffold0117 (171-248)||(36679-36756)
[»] scaffold0060 (1 HSPs)
scaffold0060 (28-116)||(75154-75242)
[»] scaffold0326 (1 HSPs)
scaffold0326 (177-248)||(17631-17702)
[»] scaffold0156 (1 HSPs)
scaffold0156 (177-248)||(10269-10340)
[»] scaffold0381 (1 HSPs)
scaffold0381 (85-159)||(16363-16437)
[»] scaffold0001 (2 HSPs)
scaffold0001 (176-248)||(51733-51805)
scaffold0001 (38-140)||(521947-522049)
[»] scaffold0467 (1 HSPs)
scaffold0467 (177-248)||(9258-9329)
[»] scaffold0056 (1 HSPs)
scaffold0056 (177-248)||(39321-39392)
[»] scaffold0375 (1 HSPs)
scaffold0375 (173-248)||(382-457)
[»] scaffold0404 (1 HSPs)
scaffold0404 (28-131)||(2862-2966)
[»] scaffold0396 (1 HSPs)
scaffold0396 (205-247)||(6433-6475)
[»] scaffold0020 (1 HSPs)
scaffold0020 (176-220)||(117261-117305)
[»] scaffold0051 (1 HSPs)
scaffold0051 (177-248)||(28229-28300)
[»] scaffold0833 (1 HSPs)
scaffold0833 (176-222)||(1208-1254)
[»] scaffold0029 (1 HSPs)
scaffold0029 (70-140)||(119123-119193)
[»] scaffold1092 (1 HSPs)
scaffold1092 (28-140)||(484-596)
[»] scaffold0367 (1 HSPs)
scaffold0367 (213-248)||(2582-2617)
[»] scaffold0175 (1 HSPs)
scaffold0175 (72-134)||(11379-11441)
[»] scaffold0075 (1 HSPs)
scaffold0075 (176-218)||(44974-45016)


Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 28 - 249
Target Start/End: Complemental strand, 25375005 - 25374784
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25375005 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggatagagctagcg 25374906  T
Q  128 cttggttccattctctataagctggttccatcccccctctaagaataccaagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgag 227  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25374905 cttggttccattctctagaagttggttccatcccccctctaagaataccaagggagaaagtgttaagcatctaggtgagaatgatgtgatagaaagtgag 25374806  T
Q  228 aaaccgcttgataagaacaaaa 249  Q
    ||||||||||||||||||||||    
T  25374805 aaaccgcttgataagaacaaaa 25374784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 46 - 159
Target Start/End: Original strand, 22289422 - 22289535
Alignment:
Q  46 agactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattctctat 145  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||     
T  22289422 agactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcgcttggttccattccctag 22289521  T
Q  146 aagctggttccatc 159  Q
    ||| ||||||||||    
T  22289522 aagttggttccatc 22289535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 16770835 - 16770965
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  16770835 catatttcttccttccttagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 16770934  T
Q  128 cttggttccattctctataagctggttccat 158  Q
    ||||||||||||| ||| |||  ||||||||    
T  16770935 cttggttccattccctagaagtcggttccat 16770965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 24800367 - 24800237
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  24800367 catatttcttccttcctcagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 24800268  T
Q  128 cttggttccattctctataagctggttccat 158  Q
    ||||||||||||| ||| |||  ||||||||    
T  24800267 cttggttccattccctagaagtcggttccat 24800237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 27618754 - 27618884
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||    
T  27618754 catatttcttccttcctaagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatcactttcccttttccttaagggatagagctagcg 27618853  T
Q  128 cttggttccattctctataagctggttccat 158  Q
    ||||||||||||| ||| |||  ||||||||    
T  27618854 cttggttccattccctagaagtcggttccat 27618884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 27622781 - 27622911
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  27622781 catatttcttccttccttagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 27622880  T
Q  128 cttggttccattctctataagctggttccat 158  Q
    ||||||||||||| ||| |||  ||||||||    
T  27622881 cttggttccattccctagaagtcggttccat 27622911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 34 - 159
Target Start/End: Complemental strand, 18993334 - 18993209
Alignment:
Q  34 tcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggt 133  Q
    ||||| |||||||||||||||||||| ||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||| || || ||||||||    
T  18993334 tcttccttcttaagactcagtggcactataaaagagaaccaagaatccgtaagacttcatctctttcccttttccttaagggatagagataacgcttggt 18993235  T
Q  134 tccattctctataagctggttccatc 159  Q
    ||||||| ||| ||| ||||||||||    
T  18993234 tccattccctagaagttggttccatc 18993209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 112696 - 112827
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||    
T  112696 catatttcttccttccttagactcagtgacaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaggggatagagctagcg 112795  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||| ||| |||  |||||||||    
T  112796 cttggttccattccctagaagtcggttccatc 112827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 13974526 - 13974657
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||||||||||| |||||||||||| ||||||||||||||||||||| |||||| || |||||||||||||||||||||| ||||||||    
T  13974526 catatttcttccttcttaagacttagtggcaccataaaagagaaccaagaagccgtaaaacttcaactctttcccttttccttaagggatagagctagcg 13974625  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    |||||||| ||||  || ||| ||||||||||    
T  13974626 cttggttcaattccatagaagttggttccatc 13974657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 25138123 - 25138012
Alignment:
Q  48 actcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattctctataa 147  Q
    |||||||||||| ||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| | ||| ||||||||||||| ||    
T  25138123 actcagtggcactataaaagagaaccaagaagtcgtaagacttcatcttattcccttttccttaagggatagagctatccctttgttccattctctagaa 25138024  T
Q  148 gctggttccatc 159  Q
    | ||||||||||    
T  25138023 gttggttccatc 25138012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 18992205 - 18992130
Alignment:
Q  173 taccaagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    ||||||||||||||||||||||| | ||||||| || |||||||||||||||||||||||||||||||||||||||    
T  18992205 taccaagggagagagtgttaagcttttaggtgaaaaagatgtgatagaaagtgagaaaccgcttgataagaacaaa 18992130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 248
Target Start/End: Complemental strand, 25137033 - 25136951
Alignment:
Q  166 ctaagaataccaagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||| |||||||||| |||||||||||||| ||||| |||||||||||||||||||||||| |||| ||||||||||| ||||    
T  25137033 ctaaaaataccaaggtagagagtgttaagcttctagatgagaatgatgtgatagaaagtgaaaaactgcttgataagaccaaa 25136951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 23013143 - 23013211
Alignment:
Q  40 ttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttcc 108  Q
    |||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| ||||||||||||    
T  23013143 ttcttaagactcagtggcactataaaagagaaccaagaagccgtgagacttcatctctttcccttttcc 23013211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 24173382 - 24173316
Alignment:
Q  177 aagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataaga 243  Q
    ||||||||||||||||||| |||||||| || ||||||||||||| |||||||||| ||||||||||    
T  24173382 aagggagagagtgttaagcttctaggtgtgagtgatgtgatagaatgtgagaaaccacttgataaga 24173316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 25147816 - 25147755
Alignment:
Q  177 aagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttga 238  Q
    ||||||||||||||||||| ||||||| |||| ||||||||||| ||||||||||| |||||    
T  25147816 aagggagagagtgttaagcttctaggtcagaaagatgtgatagagagtgagaaaccacttga 25147755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 22048559 - 22048508
Alignment:
Q  197 tctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    ||||||| |||||| ||||||| |||||||||||||||||||||| ||||||    
T  22048559 tctaggtaagaatggtgtgataaaaagtgagaaaccgcttgataaaaacaaa 22048508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 27623918 - 27623969
Alignment:
Q  197 tctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    ||||||| |||||| ||||||| |||||||||||||||||||||| ||||||    
T  27623918 tctaggtaagaatggtgtgataaaaagtgagaaaccgcttgataaaaacaaa 27623969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 16074 - 16004
Alignment:
Q  70 aaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattc 140  Q
    |||||||| |||||||| || || || ||||| |||||||||||||||| |||||| |||||||| |||||    
T  16074 aaccaagaggccgtaaggctgcacctctttcctttttccttaagggatagagctagtgcttggtttcattc 16004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 25359501 - 25359571
Alignment:
Q  70 aaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattc 140  Q
    |||||||| |||||||| || || || ||||| |||||||||||||||| |||||| |||||||| |||||    
T  25359501 aaccaagaggccgtaaggctgcacctctttcctttttccttaagggatagagctagtgcttggtttcattc 25359571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 16771954 - 16771996
Alignment:
Q  176 caagggagagagtgttaagcatctaggtgagaatgatgtgata 218  Q
    |||||||||||||||||||| |||||||||||| |||| ||||    
T  16771954 caagggagagagtgttaagcttctaggtgagaaggatgcgata 16771996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 24370339 - 24370253
Alignment:
Q  38 ctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagcta 124  Q
    ||||||||||||||||||| ||  |  |||| ||||||||||||||||| || || ||  |||| ||||| |||||||||| |||||    
T  24370339 ctttcttaagactcagtggaactttgaaagaaaaccaagaagccgtaaggctgcacctcattcctttttctttaagggatagagcta 24370253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 140
Target Start/End: Complemental strand, 20232 - 20135
Alignment:
Q  43 ttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattc 140  Q
    ||||||||||| || ||| |  ||| ||| ||||||| |||||| || || |||||||| ||  |||||||||||| |||| | ||||||||||||||    
T  20232 ttaagactcagcggaaccttgaaagcgaatcaagaagtcgtaaggctgcacctttttcctttcaccttaagggatagagctggtgcttggttccattc 20135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 25776013 - 25776144
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  25776013 catatctcttctttcttaagactcagtggcactataaaagagaaccaagaagccgtaagacctcatctttttcccttttccttaagggatagagctagcg 25776112  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||||||| ||| ||||||||||    
T  25776113 cttggttccattctctagaagttggttccatc 25776144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 8736514 - 8736407
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  8736514 catatttcttctttctttagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 8736415  T
Q  128 cttggttc 135  Q
    ||||||||    
T  8736414 cttggttc 8736407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 20021164 - 20021034
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  20021164 catatttcttccttccttagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 20021065  T
Q  128 cttggttccattctctataagctggttccat 158  Q
    ||||||||||||| ||| |||  ||||||||    
T  20021064 cttggttccattccctagaagtcggttccat 20021034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 20165386 - 20165516
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  20165386 catatttcttccttcctcagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 20165485  T
Q  128 cttggttccattctctataagctggttccat 158  Q
    ||||||||||||| ||| |||  ||||||||    
T  20165486 cttggttccattccctagaagtcggttccat 20165516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 2648462 - 2648593
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| |||||||||||||||||||| ||| |||||||||||||| |||||||||||||||| |||||||||| ||||||||||| ||||||||    
T  2648462 catatttcttccttcttaagactcagtggcactataaaagagaaccaagaatccgtaagacttcatctctttccctttttcttaagggatagagctagcg 2648561  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||| ||||||||| ||| ||| ||||||||||    
T  2648562 cttagttccattccctagaagttggttccatc 2648593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 18279647 - 18279516
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| ||||| |||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  18279647 catatttcttccttcctaagaatcagtggcactataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 18279548  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||| ||| ||| | ||||||||    
T  18279547 cttggttccattccctagaagttcgttccatc 18279516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 22772166 - 22772036
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | ||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||    
T  22772166 catatttcttccttccttagactcaatggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaaaggatagagctagcg 22772067  T
Q  128 cttggttccattctctataagctggttccat 158  Q
    ||||||||||||| |||||||  ||||||||    
T  22772066 cttggttccattccctataagtcggttccat 22772036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 40 - 159
Target Start/End: Original strand, 35244407 - 35244526
Alignment:
Q  40 ttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccatt 139  Q
    ||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||    
T  35244407 ttcttaagacttagtggcaccataaaagagaaccaagaagccataagacttcatctctttcccttttccttaagggatagagctagtgcttggttccatt 35244506  T
Q  140 ctctataagctggttccatc 159  Q
    |  || ||| ||||||||||    
T  35244507 ccttagaagttggttccatc 35244526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 24860272 - 24860143
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||    
T  24860272 catatttcttccttccttagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttccc-tttccttaagggatagagctagcg 24860174  T
Q  128 cttggttccattctctataagctggttccat 158  Q
    ||||||||||||| ||| |||  ||||||||    
T  24860173 cttggttccattccctagaagtcggttccat 24860143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 35 - 159
Target Start/End: Complemental strand, 19562781 - 19562657
Alignment:
Q  35 cttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggtt 134  Q
    |||| ||| |||||||||||| ||| ||| ||||||||||||||||| ||||||||||||| ||| |||||||||||||||||| |||||||||||| ||    
T  19562781 cttccttcctaagactcagtgacactataaaagagaaccaagaagccttaagacttcatctctttaccttttccttaagggatagagctagcgcttgttt 19562682  T
Q  135 ccattctctataagctggttccatc 159  Q
    |||||| ||  ||| ||||||||||    
T  19562681 ccattccctcgaagttggttccatc 19562657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 25777113 - 25777196
Alignment:
Q  166 ctaagaataccaagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaaa 249  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  25777113 ctaaaaataccaagggagagagtgttaagcttctaggtgagaatgatgtgatagaaagtgagaaaccacttgataagaccaaaa 25777196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 2653187 - 2653262
Alignment:
Q  173 taccaagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    ||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2653187 taccaagggagagagtgttaagcttttaggtgagaaagatgtgatagaaagtgagaaaccgcttgataagaacaaa 2653262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 23613805 - 23613713
Alignment:
Q  48 actcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattc 140  Q
    |||||||||||| ||| ||||||||||||||| ||| |||||  |||| |||||||||||||||||||||| |||||| ||||||||||||||    
T  23613805 actcagtggcactataaaagagaaccaagaagtcgtgagactctatctctttcccttttccttaagggatagagctagtgcttggttccattc 23613713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 19561672 - 19561597
Alignment:
Q  173 taccaagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    ||||||||||||||||||||||| | |||||||||| |||||||| || |||||||||||||||||||||||||||    
T  19561672 taccaagggagagagtgttaagcttttaggtgagaaagatgtgatcgagagtgagaaaccgcttgataagaacaaa 19561597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 22597023 - 22596952
Alignment:
Q  177 aagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  22597023 aagggagagagtgtgaagcttctaggtgagagtgatgtgatagaaagtgagaaaccgcttgataagaccaaa 22596952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 159
Target Start/End: Original strand, 11234624 - 11234715
Alignment:
Q  68 agaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattctctataagctggttccatc 159  Q
    |||| ||||||||| ||||| ||||||| |||||||||||||||||||||| | ||||||||||||||||||| ||| |||  |||||||||    
T  11234624 agaagcaagaagccataagaattcatctctttcccttttccttaagggatagaactagcgcttggttccattccctagaagtcggttccatc 11234715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 23617418 - 23617347
Alignment:
Q  177 aagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||||||||| || ||| ||| |||| |||||||||||||||||||||||||||||||||||||||    
T  23617418 aagggagagagtgttaggcttctgggtaagaaagatgtgatagaaagtgagaaaccgcttgataagaacaaa 23617347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 8727931 - 8727859
Alignment:
Q  176 caagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||||||||||||| ||||||| |||| | |||||||||||||||||||||||||||  ||||||||    
T  8727931 caagggagagagtgttaagcttctaggtaagaaaggtgtgatagaaagtgagaaaccgcttgaggagaacaaa 8727859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 16160143 - 16160071
Alignment:
Q  176 caagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||||||||||||  ||||||| |||| | ||||||| |||||||||||||||||||||||||||||    
T  16160143 caagggagagagtgttaagtgtctaggtaagaaaggtgtgataaaaagtgagaaaccgcttgataagaacaaa 16160071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 140
Target Start/End: Complemental strand, 23522794 - 23522692
Alignment:
Q  38 ctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttcca 137  Q
    |||||| |||||||||||| ||| |  | | |||||||||||| |||||  | || || ||||| |||||||||||||||| |||||| |||||||||||    
T  23522794 ctttctcaagactcagtggaaccttgaaggcgaaccaagaagctgtaaggttgcacctctttcctttttccttaagggatagagctagtgcttggttcca 23522695  T
Q  138 ttc 140  Q
    |||    
T  23522694 ttc 23522692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 18628620 - 18628732
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||||||  ||||||||| ||  ||||| ||| | |||| ||| ||||||||| |||| || || || ||||| || ||||||||||||| |||||| |    
T  18628620 catatctcaactttcttaacacctagtggaaccttggaagcgaatcaagaagccctaaggctgcacctctttcctttctccttaagggatagagctagtg 18628719  T
Q  128 cttggttccattc 140  Q
    |||||||||||||    
T  18628720 cttggttccattc 18628732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 248
Target Start/End: Original strand, 11216303 - 11216346
Alignment:
Q  205 agaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||| ||||||||| |||||||||||||||||||||||||||||    
T  11216303 agaaagatgtgataaaaagtgagaaaccgcttgataagaacaaa 11216346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 24859134 - 24859083
Alignment:
Q  197 tctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    ||||||| |||||| ||||||| |||||||||||||||||||||| ||||||    
T  24859134 tctaggtaagaatggtgtgataaaaagtgagaaaccgcttgataaaaacaaa 24859083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 17792842 - 17792772
Alignment:
Q  70 aaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattc 140  Q
    |||||||  |||||||| || || || |||||||||||||||||||||| |||||| |||||||| |||||    
T  17792842 aaccaaggggccgtaaggctgcacctctttcccttttccttaagggatagagctagtgcttggtttcattc 17792772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 22600226 - 22600159
Alignment:
Q  73 caagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattc 140  Q
    ||||||| |||||| || || || ||||| || ||||||||||||||| |||| ||||||||||||||    
T  22600226 caagaagtcgtaaggctgcacctatttcctttctccttaagggataaatctagtgcttggttccattc 22600159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 20020181 - 20020139
Alignment:
Q  176 caagggagagagtgttaagcatctaggtgagaatgatgtgata 218  Q
    |||||||||||||||||||| |||||||||||| |||| ||||    
T  20020181 caagggagagagtgttaagcttctaggtgagaaggatgcgata 20020139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 22286191 - 22286322
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  22286191 catatctctactttcttaagactcagtggcactataaaagagaaccaagaagccgtaaaacttcatctttttcccttttccttaagggatagagctagcg 22286290  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||||||| ||| ||||||||||    
T  22286291 cttggttccattctctagaagttggttccatc 22286322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 22094429 - 22094560
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  22094429 catatttcttccttccttagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 22094528  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||| ||| |||  |||||||||    
T  22094529 cttggttccattccctagaagtcggttccatc 22094560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 8309656 - 8309786
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  8309656 catatttcttccttccttagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 8309755  T
Q  128 cttggttccattctctataagctggttccat 158  Q
    ||||||||||||| ||| |||  ||||||||    
T  8309756 cttggttccattccctagaagtcggttccat 8309786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 21822561 - 21822673
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  21822561 catatttcttccttccttagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 21822660  T
Q  128 cttggttccattc 140  Q
    |||||||||||||    
T  21822661 cttggttccattc 21822673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 18400478 - 18400609
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  18400478 catatttcttccttcctaagactcagtggcaccataaaagagaactaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 18400577  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    |||||||| |||| ||| |||  |||||||||    
T  18400578 cttggttctattccctagaagtcggttccatc 18400609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 8327879 - 8327749
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||    
T  8327879 catatttcttccttccttagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctggcg 8327780  T
Q  128 cttggttccattctctataagctggttccat 158  Q
    ||||||||||||| ||| |||  ||||||||    
T  8327779 cttggttccattccctagaagtcggttccat 8327749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 22827122 - 22827231
Alignment:
Q  48 actcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattctctataa 147  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||| ||    
T  22827122 actcagtggcactataaaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggatagagctagcgcttggttcca--ctctagaa 22827219  T
Q  148 gctggttccatc 159  Q
    | ||||||||||    
T  22827220 gttggttccatc 22827231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 40 - 159
Target Start/End: Original strand, 25468502 - 25468621
Alignment:
Q  40 ttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccatt 139  Q
    ||||||||||| |||||||||||| ||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  25468502 ttcttaagacttagtggcaccataaaagagaaccaagaagtcgtaatacttcatctctttcccttttccttaagggatagagctagcgcttggttccatt 25468601  T
Q  140 ctctataagctggttccatc 159  Q
    | ||| |||  |||||||||    
T  25468602 ccctagaagtcggttccatc 25468621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 42 - 159
Target Start/End: Complemental strand, 22038533 - 22038416
Alignment:
Q  42 cttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattct 141  Q
    |||||||||||||||| ||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||     
T  22038533 cttaagactcagtggcgccataaaagagaaccaagaagctgtaagacttcatctctttcccttttccttaagggatagagctagagcttggttccattcc 22038434  T
Q  142 ctataagctggttccatc 159  Q
    ||| |||  |||||||||    
T  22038433 ctagaagtcggttccatc 22038416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 21951255 - 21951386
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||| ||||||||| ||||||||||||||||| ||||||| ||||| |||||||| ||||||||||||| ||||||||    
T  21951255 catatttcttccttccttagactcagcggcaccataaaagagaaccaagaagccttaagactccatctctttcccttctccttaagggatagagctagcg 21951354  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||| ||| |||  |||||||||    
T  21951355 cttggttccattccctagaagtcggttccatc 21951386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 22287301 - 22287383
Alignment:
Q  166 ctaagaataccaagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22287301 ctaaaaataccaagggagagagtgttaagcttctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaccaaa 22287383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 22828218 - 22828292
Alignment:
Q  173 taccaagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaa 247  Q
    ||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  22828218 taccaagggagagagtgttaagcttctaggtgagaaagatttgatagaaagtgagaaaccgcttgataagaacaa 22828292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 248
Target Start/End: Original strand, 21952374 - 21952446
Alignment:
Q  176 caagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||||||||||||  ||||||| |||| | || ||||||| ||||||||||||||||||||||||||    
T  21952374 caagggagagagtgttaagtgtctaggtaagaaaggtgcgatagaaggtgagaaaccgcttgataagaacaaa 21952446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 248
Target Start/End: Original strand, 18401592 - 18401659
Alignment:
Q  181 gagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    ||||||||||||||| | ||||| |||| ||||||||||||||||||||| ||||||| |||||||||    
T  18401592 gagagagtgttaagcttttaggtaagaaagatgtgatagaaagtgagaaatcgcttgaaaagaacaaa 18401659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 22359716 - 22359787
Alignment:
Q  177 aagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    ||||||||||||||||| | |||||||||||| ||||||||||| ||||||||||| ||||| | |||||||    
T  22359716 aagggagagagtgttaaacttctaggtgagaaagatgtgatagagagtgagaaaccacttgacaggaacaaa 22359787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 22037429 - 22037357
Alignment:
Q  176 caagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||||||||||||  ||||||| |||| | |||||||||||||||||||  |||||||||| |||||    
T  22037429 caagggagagagtgttaagtgtctaggtaagaaaggtgtgatagaaagtgagaaattgcttgataaggacaaa 22037357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 8310795 - 8310846
Alignment:
Q  197 tctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    ||||||| |||||| ||||||| |||||||||||||||||||||| ||||||    
T  8310795 tctaggtaagaatggtgtgataaaaagtgagaaaccgcttgataaaaacaaa 8310846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 19292328 - 19292258
Alignment:
Q  70 aaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattc 140  Q
    |||||||| |||||||| || || || ||| | |||||||||||||||| |||||| |||||||| |||||    
T  19292328 aaccaagaggccgtaaggctgcacctcttttctttttccttaagggatagagctagtgcttggtttcattc 19292258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 23219488 - 23219418
Alignment:
Q  70 aaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattc 140  Q
    |||||||| |||||||| || || || ||||| |||||||||||||||| |||||| || ||||| |||||    
T  23219488 aaccaagaggccgtaaggctacacctctttcctttttccttaagggatagagctagtgcatggtttcattc 23219418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 14070588 - 14070457
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  14070588 catatctcttctttcttaagactcagtggcactataaaagagaaccaagaagccgtaagacttcatatttttcccttttccttaagggatagagctagcg 14070489  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    |||||||||| |||||| ||| ||||||||||    
T  14070488 cttggttccactctctagaagttggttccatc 14070457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 34 - 159
Target Start/End: Original strand, 13666219 - 13666344
Alignment:
Q  34 tcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggt 133  Q
    ||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13666219 tcttccttcttaagacttagtggcaccataaaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggatagagctagcgcttggt 13666318  T
Q  134 tccattctctataagctggttccatc 159  Q
    ||||||| ||| |||  |||||||||    
T  13666319 tccattccctagaagtaggttccatc 13666344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 13511391 - 13511260
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  13511391 catatttcttccttcctaagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 13511292  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||| ||| |||  |||||||||    
T  13511291 cttggttccattccctagaagtcggttccatc 13511260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 28 - 140
Target Start/End: Complemental strand, 15633941 - 15633829
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  15633941 catatttcttccttcctaagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 15633842  T
Q  128 cttggttccattc 140  Q
    |||||||||||||    
T  15633841 cttggttccattc 15633829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 155
Target Start/End: Complemental strand, 13201710 - 13201583
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||    
T  13201710 catatttcttccttccttagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttctccttaagggatacagctagcg 13201611  T
Q  128 cttggttccattctctataagctggttc 155  Q
    ||||||||||||| ||||||| ||||||    
T  13201610 cttggttccattccctataagttggttc 13201583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 10142246 - 10142376
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  10142246 catatttcttccttcctcagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 10142345  T
Q  128 cttggttccattctctataagctggttccat 158  Q
    ||||||||||||| ||| |||  ||||||||    
T  10142346 cttggttccattccctagaagtcggttccat 10142376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 11879371 - 11879241
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  11879371 catatttcttccttccttagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 11879272  T
Q  128 cttggttccattctctataagctggttccat 158  Q
    ||||||||||||| ||| |||  ||||||||    
T  11879271 cttggttccattccctagaagtcggttccat 11879241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 937 - 806
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  937 catatttcttccttccttagactcagtggcacgataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 838  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||| ||| |||  |||||||||    
T  837 cttggttccattccctagaagtcggttccatc 806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 12191856 - 12191726
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  12191856 catatttcttccttccttagactcagtggcaccattaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 12191757  T
Q  128 cttggttccattctctataagctggttccat 158  Q
    ||||||||||||| ||| |||  ||||||||    
T  12191756 cttggttccattccctagaagtcggttccat 12191726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 12198500 - 12198370
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  12198500 catatttcttccttccttagactcagtggcaccattaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 12198401  T
Q  128 cttggttccattctctataagctggttccat 158  Q
    ||||||||||||| ||| |||  ||||||||    
T  12198400 cttggttccattccctagaagtcggttccat 12198370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 13192423 - 13192293
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  13192423 catatttcttccttccttagactcagtggcaccattaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 13192324  T
Q  128 cttggttccattctctataagctggttccat 158  Q
    ||||||||||||| ||| |||  ||||||||    
T  13192323 cttggttccattccctagaagtcggttccat 13192293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 15640262 - 15640392
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||    
T  15640262 catatttcttccttccttagactcagtggcaccataaaagagaaccaagaagccgtaagacttcacctctttcccttttccttaagggatagagctagcg 15640361  T
Q  128 cttggttccattctctataagctggttccat 158  Q
    ||||||||||||| ||| |||  ||||||||    
T  15640362 cttggttccattccctagaagtcggttccat 15640392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 28 - 140
Target Start/End: Complemental strand, 10165209 - 10165097
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||    
T  10165209 catatttcttccttccttagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaaggggtagagctagcg 10165110  T
Q  128 cttggttccattc 140  Q
    |||||||||||||    
T  10165109 cttggttccattc 10165097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 28 - 140
Target Start/End: Complemental strand, 13141207 - 13141095
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | ||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  13141207 catatttcttccttccttagacttagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 13141108  T
Q  128 cttggttccattc 140  Q
    |||||||||||||    
T  13141107 cttggttccattc 13141095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 72 - 159
Target Start/End: Complemental strand, 12159794 - 12159707
Alignment:
Q  72 ccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattctctataagctggttccatc 159  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| |||  |||||||||    
T  12159794 ccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcgcttggttccattccctagaagtcggttccatc 12159707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 14069472 - 14069395
Alignment:
Q  171 aataccaagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||||| |||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  14069472 aataccaagggaaagagtgttaagcttttaggtgggaatgatgtgatagaaagtgagaaaccgcttgataagaccaaa 14069395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 14454915 - 14454842
Alignment:
Q  175 ccaagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||||| |||||||| |||||||||||| ||||||||||| ||||||||||| |||||||||||||||    
T  14454915 ccaagggagagaatgttaagcttctaggtgagaaagatgtgatagagagtgagaaaccacttgataagaacaaa 14454842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 176 - 248
Target Start/End: Original strand, 13075780 - 13075852
Alignment:
Q  176 caagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||||||||||||  ||||||| |||| | |||||||||||||||||||||||||||||||||||||    
T  13075780 caagggagagagtgttaagtgtctaggtaagaaagttgtgatagaaagtgagaaaccgcttgataagaacaaa 13075852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 13604193 - 13604271
Alignment:
Q  80 ccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattctctataagctggttccat 158  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| || ||| |||  ||||||||    
T  13604193 ccgtaagacttcatctctttcccttttccttaagggatagagctagcgcttggttccactccctagaagtcggttccat 13604271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 14455971 - 14455921
Alignment:
Q  90 tcatctttttcccttttccttaagggataaagctagcgcttggttccattc 140  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  14455971 tcatctctttcccttttccttaagggatagagctagcgcttggttccattc 14455921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 248
Target Start/End: Complemental strand, 13140066 - 13140017
Alignment:
Q  199 taggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    ||||| |||||| ||||||| |||||||||||||||||||||||||||||    
T  13140066 taggtaagaatggtgtgataaaaagtgagaaaccgcttgataagaacaaa 13140017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 15632828 - 15632767
Alignment:
Q  183 gagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaa 244  Q
    |||||||||| |  ||||||| |||||| ||||||| |||||||||||||||||||||||||    
T  15632828 gagagtgttaggtgtctaggtaagaatggtgtgataaaaagtgagaaaccgcttgataagaa 15632767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 13191284 - 13191233
Alignment:
Q  197 tctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    ||||||| |||||| ||||||| |||||||||||||||||||||| ||||||    
T  13191284 tctaggtaagaatggtgtgataaaaagtgagaaaccgcttgataaaaacaaa 13191233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 248
Target Start/End: Original strand, 17452220 - 17452287
Alignment:
Q  181 gagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||||| || | | ||| |||| | |||||||||||||||||||||||||||||| ||||||    
T  17452220 gagagagtgttaggctttttggtaagaaaggtgtgatagaaagtgagaaaccgcttgataaaaacaaa 17452287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 22168776 - 22168706
Alignment:
Q  70 aaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattc 140  Q
    |||||||| |||||||| || || || ||||| |||||||||||||||| |||||| |||||||| |||||    
T  22168776 aaccaagaggccgtaaggctgcacctctttcctttttccttaagggatagagctagtgcttggtttcattc 22168706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 10143386 - 10143437
Alignment:
Q  197 tctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    ||||||| |||||| ||||||| |  ||||||||||||||||||||||||||    
T  10143386 tctaggtaagaatggtgtgataaaccgtgagaaaccgcttgataagaacaaa 10143437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 10164091 - 10164053
Alignment:
Q  176 caagggagagagtgttaagcatctaggtgagaatgatgt 214  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  10164091 caagggagagagtgttaagcttctaggtgagaaggatgt 10164053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 10606999 - 10606929
Alignment:
Q  70 aaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattc 140  Q
    |||||||| |||||||| || || || ||||| |||||||||||||||| | |||| |||||||| |||||    
T  10606999 aaccaagaggccgtaaggctgcacctctttcctttttccttaagggatagaactagtgcttggtttcattc 10606929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 12380964 - 12381006
Alignment:
Q  176 caagggagagagtgttaagcatctaggtgagaatgatgtgata 218  Q
    |||||||||||||||||||| |||||||||||| |||| ||||    
T  12380964 caagggagagagtgttaagcttctaggtgagaaggatgcgata 12381006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 20151869 - 20151939
Alignment:
Q  70 aaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattc 140  Q
    |||||||| |||||||| || || || ||||| || ||||||||||||| |||||| |||||||| |||||    
T  20151869 aaccaagaggccgtaaggctgcacctctttcctttctccttaagggatagagctagtgcttggtttcattc 20151939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 12190731 - 12190666
Alignment:
Q  183 gagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||| |  ||||||| |||||| ||||||| |  |||||||||| |||||||||||||||    
T  12190731 gagagtgttaggtgtctaggtaagaatggtgtgataaaccgtgagaaaccacttgataagaacaaa 12190666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 13200589 - 13200545
Alignment:
Q  176 caagggagagagtgttaagcatctaggtgagaatgatgtgataga 220  Q
    ||||||||||| |||||||| |||||||||||| |||| ||||||    
T  13200589 caagggagagattgttaagcttctaggtgagaaggatgcgataga 13200545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 24230 - 24361
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||||||||| ||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  24230 catatctcttccttcataagacttagtggcaccatataagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 24329  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||| ||| ||| ||||||||||    
T  24330 cttggttccattccctagaagttggttccatc 24361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 28427 - 28558
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||||||||| ||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  28427 catatctcttccttcataagacttagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 28526  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||| ||| ||| ||||||||||    
T  28527 cttggttccattccctagaagttggttccatc 28558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 27 - 159
Target Start/End: Original strand, 48244 - 48376
Alignment:
Q  27 tcatatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagc 126  Q
    |||||| ||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||    
T  48244 tcatatttcttccttcttaagactcagtggcactataaaagagaaccaagaagccgtaagacttcatctctttccattttccttaagggatagagctagc 48343  T
Q  127 gcttggttccattctctataagctggttccatc 159  Q
    |||||||||||||| ||| |||  |||||||||    
T  48344 gcttggttccattccctagaagtcggttccatc 48376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 16317 - 16186
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  16317 catatttcttccttcttaagacttagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 16218  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||| ||| ||| ||||||||||    
T  16217 cttggttccattccctagaagttggttccatc 16186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 45 - 157
Target Start/End: Complemental strand, 55534 - 55422
Alignment:
Q  45 aagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattctcta 144  Q
    |||||||| |||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||| |||| |||    
T  55534 aagactcaatggcactataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctaccgcttggttctattcccta 55435  T
Q  145 taagctggttcca 157  Q
     ||| ||||||||    
T  55434 gaagttggttcca 55422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 54484 - 54413
Alignment:
Q  177 aagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||| |||||||| | ||||||||||  |||||||| ||||||||||||| |||||||||||||||    
T  54484 aagggagagaatgttaagcttttaggtgagaaatatgtgataaaaagtgagaaaccacttgataagaacaaa 54413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 25688 - 25819
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  25688 catatttcttccttccttagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 25787  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||| ||| |||  |||||||||    
T  25788 cttggttccattccctagaagtcggttccatc 25819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 40 - 159
Target Start/End: Original strand, 12736855 - 12736974
Alignment:
Q  40 ttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccatt 139  Q
    |||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  12736855 ttctcaagactcagtggcactataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcgcttggttccatt 12736954  T
Q  140 ctctataagctggttccatc 159  Q
    ||||| ||| ||||||||||    
T  12736955 ctctagaagttggttccatc 12736974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 16470535 - 16470404
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  16470535 catatttcttccttccttagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 16470436  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||| | ||| ||| ||||||||||    
T  16470435 cttggttccataccctagaagttggttccatc 16470404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 13669024 - 13669154
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  13669024 catatttcttccttccttagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 13669123  T
Q  128 cttggttccattctctataagctggttccat 158  Q
    ||||||||||||| ||| |||  ||||||||    
T  13669124 cttggttccattccctagaagtcggttccat 13669154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 34 - 159
Target Start/End: Complemental strand, 11967109 - 11966984
Alignment:
Q  34 tcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggt 133  Q
    ||||| ||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  11967109 tcttccttcttaagacttagtgacaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcgcttggt 11967010  T
Q  134 tccattctctataagctggttccatc 159  Q
    ||||||| ||| ||| ||||| ||||    
T  11967009 tccattccctagaagttggttacatc 11966984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 18598348 - 18598218
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  18598348 catatttcttccttccttagactcagtggcaccataaaagagaaccaataagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 18598249  T
Q  128 cttggttccattctctataagctggttccat 158  Q
    ||||||||||||| ||| |||  ||||||||    
T  18598248 cttggttccattccctagaagtcggttccat 18598218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 46 - 158
Target Start/End: Original strand, 18275230 - 18275342
Alignment:
Q  46 agactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattctctat 145  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||     
T  18275230 agacttagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcgcttggttccattccctag 18275329  T
Q  146 aagctggttccat 158  Q
    |||  ||||||||    
T  18275330 aagtcggttccat 18275342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 13653192 - 13653323
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  13653192 catatttcttccttccttagactcagtggcactataaaagtgaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 13653291  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||| ||| |||  |||||||||    
T  13653292 cttggttccattccctagaagtcggttccatc 13653323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 16527195 - 16527326
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||    
T  16527195 catatttcttccttccttagactcagtggcactataaaagagaaccaagaagccgtaagacttcatctctttccctttttcttaagggatagagctagcg 16527294  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||| ||| |||  |||||||||    
T  16527295 cttggttccattccctagaagtcggttccatc 16527326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 12388302 - 12388171
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| |||||||||||||||||||| ||| |||||||||||||| | | |||||||||||| |||||||||||||||||||||| ||||||||    
T  12388302 catatttcttccttcttaagactcagtggcactataaaagagaaccaagaaactgaaagacttcatctctttcccttttccttaagggatagagctagcg 12388203  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
     |||||||||||| ||| |||  |||||||||    
T  12388202 gttggttccattccctagaagtcggttccatc 12388171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 12737961 - 12738036
Alignment:
Q  173 taccaagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    ||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12737961 taccaagggagagagtgttaagcttttaggtgagaaagatgtgatagaaagtgagaaaccgcttgataagaacaaa 12738036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 20104558 - 20104633
Alignment:
Q  173 taccaagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||| |||||||||||||||| | |||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  20104558 taccaaaggagagagtgttaagcttttaggtgagaaagatgtgatagaaagtgagaaaccacttgataagaacaaa 20104633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 13372692 - 13372621
Alignment:
Q  177 aagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||||||||| || | ||||| |||| ||||||||||||||||||||| |||||||||||||||||    
T  13372692 aagggagagagtgttaggcttttaggtaagaaagatgtgatagaaagtgagaaatcgcttgataagaacaaa 13372621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 16528317 - 16528388
Alignment:
Q  177 aagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||||||||| || | |  ||||||| |||| ||||||||||||||||||||||||||||||||||    
T  16528317 aagggagagagtgttaggcttttgagtgagaaagatgcgatagaaagtgagaaaccgcttgataagaacaaa 16528388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 16469420 - 16469348
Alignment:
Q  176 caagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||||||||||||| ||||||  |||| | || ||||||| ||||||||||||||||||| ||||||    
T  16469420 caagggagagagtgttaagcgtctaggcaagaaaggtgcgatagaaggtgagaaaccgcttgataaaaacaaa 16469348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 13654261 - 13654332
Alignment:
Q  177 aagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||||||||| || | | ||| |||| | ||||||||||||||||||||| |||||||||||||||    
T  13654261 aagggagagagtgttaggcttttgggtaagaaaggtgtgatagaaagtgagaaaccacttgataagaacaaa 13654332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 16764927 - 16764856
Alignment:
Q  177 aagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||||||||| |  | | ||| |||| | |||||||||||||||||||||||||||||||||||||    
T  16764927 aagggagagagtgttaggatttttggtaagaaaggtgtgatagaaagtgagaaaccgcttgataagaacaaa 16764856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 18276323 - 18276374
Alignment:
Q  197 tctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    ||||||| |||||| ||||||| ||||||| |||||||||||||||||||||    
T  18276323 tctaggtaagaatggtgtgataaaaagtgacaaaccgcttgataagaacaaa 18276374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 543946 - 543876
Alignment:
Q  70 aaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattc 140  Q
    |||||||| |||||||| || || || ||||| |||||||||||||||| |||||| |||||||| |||||    
T  543946 aaccaagaggccgtaaggctgcacctctttcctttttccttaagggatagagctagtgcttggtttcattc 543876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 8786130 - 8786060
Alignment:
Q  70 aaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattc 140  Q
    |||||||| |||||||| || || || ||||| |||||||||||||||| |||||| |||||||| |||||    
T  8786130 aaccaagaggccgtaaggctgcacctctttcctttttccttaagggatagagctagtgcttggtttcattc 8786060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 14546831 - 14546901
Alignment:
Q  70 aaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattc 140  Q
    |||||||| |||||||| || || || ||||| |||||||||||||||| |||||| |||||||| |||||    
T  14546831 aaccaagaggccgtaaggctgcacctctttcctttttccttaagggatagagctagtgcttggtttcattc 14546901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 16329695 - 16329625
Alignment:
Q  70 aaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattc 140  Q
    |||||||| |||||||| || || || ||||| |||||||||||||||| |||||| |||||||| |||||    
T  16329695 aaccaagaggccgtaaggctgcacctctttcctttttccttaagggatagagctagtgcttggtttcattc 16329625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 23511444 - 23511514
Alignment:
Q  70 aaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattc 140  Q
    |||||||| |||||||| || || || ||||| |||||||||||||||| |||||| |||||||| |||||    
T  23511444 aaccaagaggccgtaaggctgcacctctttcctttttccttaagggatagagctagtgcttggtttcattc 23511514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 11958746 - 11958702
Alignment:
Q  176 caagggagagagtgttaagcatctaggtgagaatgatgtgataga 220  Q
    ||||||| |||||||||||| |||||||||||| |||||||||||    
T  11958746 caagggaaagagtgttaagcttctaggtgagaaagatgtgataga 11958702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 13670130 - 13670172
Alignment:
Q  176 caagggagagagtgttaagcatctaggtgagaatgatgtgata 218  Q
    |||||||||||||||||||| |||||||||||| |||| ||||    
T  13670130 caagggagagagtgttaagcttctaggtgagaaggatgcgata 13670172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 18597233 - 18597191
Alignment:
Q  176 caagggagagagtgttaagcatctaggtgagaatgatgtgata 218  Q
    |||||||||||||||||||| |||||||||||| |||| ||||    
T  18597233 caagggagagagtgttaagcttctaggtgagaaggatgcgata 18597191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1589 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold1589
Description:

Target: scaffold1589; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 1544 - 1413
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||||||||| ||||||||||| |||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||      
T  1544 catatctcttccttcttaagacttagtggcaccatcaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagtt 1445  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||| ||| ||| ||||||||||    
T  1444 cttggttccattccctagaagttggttccatc 1413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 30768158 - 30768027
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  30768158 catatttcttcattccttagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 30768059  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||| ||| |||  |||||||||    
T  30768058 cttggttccattccctagaagtcggttccatc 30768027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 16103121 - 16102991
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  16103121 catatttcttccttccttagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 16103022  T
Q  128 cttggttccattctctataagctggttccat 158  Q
    ||||||||||||| ||| |||  ||||||||    
T  16103021 cttggttccattccctagaagtcggttccat 16102991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 20443231 - 20443100
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | ||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  20443231 catatttcttccttccttagactcaatggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 20443132  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||| ||| |||  |||||||||    
T  20443131 cttggttccattccctagaagtcggttccatc 20443100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 20617349 - 20617479
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||    
T  20617349 catatttcttccttccttagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagtgctagcg 20617448  T
Q  128 cttggttccattctctataagctggttccat 158  Q
    ||||||||||||| ||| |||  ||||||||    
T  20617449 cttggttccattccctagaagtcggttccat 20617479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 24968228 - 24968098
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||    
T  24968228 catatttcttccttccttagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctggcg 24968129  T
Q  128 cttggttccattctctataagctggttccat 158  Q
    ||||||||||||| ||| |||  ||||||||    
T  24968128 cttggttccattccctagaagtcggttccat 24968098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 22322487 - 22322356
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||| ||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||    
T  22322487 catatttcttccttccttagactcagtggcactataaaagagaaccaagaagccataagacttcatctctttcccttttccttaagggatagagctagcg 22322388  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||| ||| |||  |||||||||    
T  22322387 cttggttccattccctagaagtcggttccatc 22322356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 25121226 - 25121095
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||| ||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||    
T  25121226 catatttcttccttccttagactcagtggcactataaaagagaaccaagaagccgtaagacgtcatctctttcccttttccttaagggatagagctagcg 25121127  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||| ||| |||  |||||||||    
T  25121126 cttggttccattccctagaagtcggttccatc 25121095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 25180317 - 25180186
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||| ||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||    
T  25180317 catatttcttccttccttagactcagtggcactataaaagagaaccaagaagccgtaagacgtcatctctttcccttttccttaagggatagagctagcg 25180218  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||| ||| |||  |||||||||    
T  25180217 cttggttccattccctagaagtcggttccatc 25180186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 26774329 - 26774198
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | ||||| |||||||| ||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||    
T  26774329 catatttcttccttccttagactaagtggcacaataaaagagaaccaagaagccataagacttcatctctttcccttttccttaagggatagagctagcg 26774230  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||| ||| |||  |||||||||    
T  26774229 cttggttccattccctagaagtcggttccatc 26774198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 21384577 - 21384652
Alignment:
Q  173 taccaagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||||||| | |||||| || ||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  21384577 taccaagggagagaatattaagcttccaggtgagaatgatgtgatagaaagtgagaaacctcttgataagaccaaa 21384652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 21274515 - 21274444
Alignment:
Q  177 aagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||| |||| ||||| |||||||||||| ||||||||||| ||||||||||| ||||| |||||||||    
T  21274515 aagggagaaagtgctaagcttctaggtgagaaagatgtgatagagagtgagaaaccacttgaaaagaacaaa 21274444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 21383461 - 21383591
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||||||  |||||||||||||||| || ||  |  ||| ||| |||||||||||||| || || || ||||| || ||||||||||||| |||||| |    
T  21383461 catatctcaactttcttaagactcagcggaactttgaaagcgaatcaagaagccgtaaggctgcacctctttcctttctccttaagggatagagctagtg 21383560  T
Q  128 cttggttccattctctataagctggttccat 158  Q
    ||||||| |||||  || ||| |||||||||    
T  21383561 cttggtttcattcattagaagttggttccat 21383591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 24967103 - 24967038
Alignment:
Q  183 gagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||| |||  ||||||| |||||| ||||||| |||||||||||||||||||||| ||||||    
T  24967103 gagagtgtcaagtgtctaggtaagaatggtgtgataaaaagtgagaaaccgcttgataaaaacaaa 24967038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 25120069 - 25120033
Alignment:
Q  212 tgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  25120069 tgtgatagaaagtgagaaaccgcttgataagaacaaa 25120033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 25179159 - 25179123
Alignment:
Q  212 tgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  25179159 tgtgatagaaagtgagaaaccgcttgataagaacaaa 25179123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 20618488 - 20618539
Alignment:
Q  197 tctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    ||||||| |||||| ||||||| || ||||||||||||||||||||||||||    
T  20618488 tctaggtaagaatggtgtgataaaatgtgagaaaccgcttgataagaacaaa 20618539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 18068642 - 18068712
Alignment:
Q  70 aaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattc 140  Q
    |||||||| |||||||| || || || ||||| |||||||||||||||| |||||| |||||||| |||||    
T  18068642 aaccaagaggccgtaaggctgcacctctttcctttttccttaagggatagagctagtgcttggtttcattc 18068712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 20600293 - 20600223
Alignment:
Q  70 aaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattc 140  Q
    |||||||| |||||||| || || || ||||| |||||||||||||||| |||||| |||||||| |||||    
T  20600293 aaccaagaggccgtaaggctgcacctctttcctttttccttaagggatagagctagtgcttggtttcattc 20600223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 20606590 - 20606520
Alignment:
Q  70 aaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattc 140  Q
    |||||||| |||||||| || || || ||||| |||||||||||||||| |||||| |||||||| |||||    
T  20606590 aaccaagaggccgtaaggctgcacctctttcctttttccttaagggatagagctagtgcttggtttcattc 20606520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 20612909 - 20612839
Alignment:
Q  70 aaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattc 140  Q
    |||||||| |||||||| || || || ||||| |||||||||||||||| |||||| |||||||| |||||    
T  20612909 aaccaagaggccgtaaggctgcacctctttcctttttccttaagggatagagctagtgcttggtttcattc 20612839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 20795208 - 20795138
Alignment:
Q  70 aaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattc 140  Q
    |||||||| |||||||| || || || ||||| |||||||||||||||| |||||| |||||||| |||||    
T  20795208 aaccaagaggccgtaaggctgcacctctttcctttttccttaagggatagagctagtgcttggtttcattc 20795138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 139
Target Start/End: Complemental strand, 21275567 - 21275525
Alignment:
Q  97 tttcccttttccttaagggataaagctagcgcttggttccatt 139  Q
    |||||||||||||||||||||| ||| ||||||||||||||||    
T  21275567 tttcccttttccttaagggatagagcaagcgcttggttccatt 21275525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 21284702 - 21284632
Alignment:
Q  70 aaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattc 140  Q
    |||||||| |||||||| || || || ||||| |||||||||||||||| |||||| |||||||| |||||    
T  21284702 aaccaagaggccgtaaggctgcacctctttcctttttccttaagggatagagctagtgcttggtttcattc 21284632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 22943612 - 22943682
Alignment:
Q  70 aaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattc 140  Q
    |||||||| |||||||| || || || ||||| |||||||||||||||| |||||| |||||||| |||||    
T  22943612 aaccaagaggccgtaaggctgcacctctttcctttttccttaagggatagagctagtgcttggtttcattc 22943682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 24216189 - 24216259
Alignment:
Q  70 aaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattc 140  Q
    |||||||| |||||||| || || || ||||| |||||||||||||||| |||||| |||||||| |||||    
T  24216189 aaccaagaggccgtaaggctgcacctctttcctttttccttaagggatatagctagtgcttggtttcattc 24216259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 21277074 - 21277042
Alignment:
Q  108 cttaagggataaagctagcgcttggttccattc 140  Q
    ||||||||||| |||||||||||||||||||||    
T  21277074 cttaagggatagagctagcgcttggttccattc 21277042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 19787145 - 19787014
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||||||| ||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  19787145 catatctctactttcttaagactcagtagcactataaaagagaaccaagaagccgtaagacttcatctttttcccttttcgttaagggatagagctagcg 19787046  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||| |||||||| |||| ||  ||||||||||    
T  19787045 ctttgttccattttctagaaattggttccatc 19787014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 21803731 - 21803601
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  21803731 catatttcttccttccttagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 21803632  T
Q  128 cttggttccattctctataagctggttccat 158  Q
    ||||||||||||| ||| |||  ||||||||    
T  21803631 cttggttccattccctagaagtcggttccat 21803601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 23500679 - 23500548
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||    
T  23500679 catatttcttccttccttagactcagtggcaccataaaagagaaccaagaagccgttagacttcatctctttcccttttccttaagggatagagctagcg 23500580  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||| ||| |||  |||||||||    
T  23500579 cttggttccattccctagaagtcggttccatc 23500548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 22842910 - 22843040
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||    
T  22842910 catatttcttccttccttagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctggcg 22843009  T
Q  128 cttggttccattctctataagctggttccat 158  Q
    ||||||||||||| ||| |||  ||||||||    
T  22843010 cttggttccattccctagaagtcggttccat 22843040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 46 - 159
Target Start/End: Original strand, 20232725 - 20232838
Alignment:
Q  46 agactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattctctat 145  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||| |||     
T  20232725 agactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttctccttaagggatagagctagcgcttggttccattccctag 20232824  T
Q  146 aagctggttccatc 159  Q
    |||  |||||||||    
T  20232825 aagtcggttccatc 20232838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 52952839 - 52952708
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||    
T  52952839 catatttcttccttccttagactcagtggcacaataaaagagaaccaagaagccgtaagacttcatctctttcctttttccttaagggatagagctagcg 52952740  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    |||| |||||||| ||| |||  |||||||||    
T  52952739 cttgattccattccctagaagtcggttccatc 52952708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 8952443 - 8952333
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||||||||| |||||||||| ||| |||||||||||||||||||||||||| |||| |||||||||| ||||||||||| ||||||||    
T  8952443 catatttcttccttcttaagattcagtggcactataaaagagaaccaagaagccgtaagacttaatctctttccctttttcttaagggatagagctagcg 8952344  T
Q  128 cttggttccat 138  Q
    |||||||||||    
T  8952343 cttggttccat 8952333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 8648014 - 8648089
Alignment:
Q  173 taccaagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    ||||||||||||||||||||||| | ||||||||||  |||||||||||| |||||||||||||||||||||||||    
T  8648014 taccaagggagagagtgttaagcttttaggtgagaaaaatgtgatagaaattgagaaaccgcttgataagaacaaa 8648089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 52951717 - 52951646
Alignment:
Q  177 aagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||||||||| || ||| ||| |||| |||||||||||||||||||||||||||||||||||||||    
T  52951717 aagggagagagtgttaggcttctgggtaagaaagatgtgatagaaagtgagaaaccgcttgataagaacaaa 52951646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 8951386 - 8951311
Alignment:
Q  173 taccaagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    ||||||||||||||||||||||  |  ||||||||| ||||||||||||||||||||||| |||| ||||||||||    
T  8951386 taccaagggagagagtgttaagttttcaggtgagaaagatgtgatagaaagtgagaaaccacttggtaagaacaaa 8951311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 20233832 - 20233897
Alignment:
Q  183 gagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    ||||||||||||  |||| || |||| | |||||||||||||||||||||||| ||||||||||||    
T  20233832 gagagtgttaagtgtctaagtaagaaaggtgtgatagaaagtgagaaaccgctggataagaacaaa 20233897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 140
Target Start/End: Complemental strand, 19878947 - 19878872
Alignment:
Q  65 aagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattc 140  Q
    ||||||| |||||||| ||||| || || || ||||| || ||||||||||||| |||||| ||||||||||||||    
T  19878947 aagagaatcaagaagctgtaaggctgcacctctttcctttctccttaagggatagagctagtgcttggttccattc 19878872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 20071691 - 20071761
Alignment:
Q  70 aaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattc 140  Q
    |||||||| |||||||| || || || ||||| |||||||||||||||| |||||| |||||||| |||||    
T  20071691 aaccaagaggccgtaaggctgcacctctttcctttttccttaagggatagagctagtgcttggtttcattc 20071761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 22466892 - 22466848
Alignment:
Q  176 caagggagagagtgttaagcatctaggtgagaatgatgtgataga 220  Q
    |||||||||||||||||||| | |||||||||| |||||||||||    
T  22466892 caagggagagagtgttaagcttttaggtgagaaagatgtgataga 22466848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 6486 - 6616
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  6486 catatttcttccttccttagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 6585  T
Q  128 cttggttccattctctataagctggttccat 158  Q
    ||||||||||||| ||| |||  ||||||||    
T  6586 cttggttccattccctagaagtcggttccat 6616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 7630 - 7676
Alignment:
Q  202 gtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    ||||||||| | ||||| ||||||||||||| |||||||||||||||    
T  7630 gtgagaatggtatgataaaaagtgagaaaccacttgataagaacaaa 7676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 2173 - 2043
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  2173 catatttcttccttccttagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcg 2074  T
Q  128 cttggttccattctctataagctggttccat 158  Q
    ||||||||||||| ||| |||  ||||||||    
T  2073 cttggttccattccctagaagtcggttccat 2043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 6557 - 6444
Alignment:
Q  27 tcatatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagc 126  Q
    |||||||||||| ||| | |||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  6557 tcatatctcttccttcattagactcagtggcactataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagc 6458  T
Q  127 gcttggttccattc 140  Q
    ||||||||||||||    
T  6457 gcttggttccattc 6444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 15303215 - 15303346
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||    
T  15303215 catatttcttccttccttagactcagtggcaccataaaagagaaccaagaagccgcaagacttcatctctttcccttttccttaagggatagagctagcg 15303314  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||| ||| |||  |||||||||    
T  15303315 cttggttccattccctagaagtcggttccatc 15303346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 22106148 - 22106278
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||    
T  22106148 catatttcttccttccttagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctggcg 22106247  T
Q  128 cttggttccattctctataagctggttccat 158  Q
    ||||||||||||| ||| |||  ||||||||    
T  22106248 cttggttccattccctagaagtcggttccat 22106278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 15249520 - 15249651
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||| || |||||    
T  15249520 catatttcttccttccttagactcagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttctccttaagggatagagttagcg 15249619  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||| ||| |||  |||||||||    
T  15249620 cttggttccattccctagaagtcggttccatc 15249651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 15265121 - 15264990
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | ||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||    
T  15265121 catatttcttccttccttagacttagtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctggcg 15265022  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||| ||| |||  |||||||||    
T  15265021 cttggttccattccctagaagtcggttccatc 15264990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 248
Target Start/End: Original strand, 15250638 - 15250710
Alignment:
Q  176 caagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    ||||||||||||||||| |  ||||||| |||| | |||||||||||||||||||||||||||||||||||||    
T  15250638 caagggagagagtgttaggtgtctaggtaagaaaggtgtgatagaaagtgagaaaccgcttgataagaacaaa 15250710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 9193395 - 9193460
Alignment:
Q  94 ctttttcccttttccttaagggataaagctagcgcttggttccattctctataagctggttccatc 159  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||| || ||| ||||||||||    
T  9193395 ctttttcccttttccttaagggatagagctagtgcttggttccattctttagaagttggttccatc 9193460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 248
Target Start/End: Original strand, 15304297 - 15304369
Alignment:
Q  176 caagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    ||||||||||||||||| |  ||||||| |||| | ||||||| |||||||||||||||||||||||||||||    
T  15304297 caagggagagagtgttaggtgtctaggtaagaaaggtgtgataaaaagtgagaaaccgcttgataagaacaaa 15304369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 15858417 - 15858488
Alignment:
Q  177 aagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    ||||||||||||||||||  |||||||||||| ||||||| ||| ||||||||||| ||||| |||||||||    
T  15858417 aagggagagagtgttaagtttctaggtgagaaagatgtgagagagagtgagaaaccacttgacaagaacaaa 15858488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 16678680 - 16678751
Alignment:
Q  177 aagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||||||||| || | | ||| |||| | |||||||||||||||||||||||||||||||||||||    
T  16678680 aagggagagagtgttaggctttttggtaagaaaggtgtgatagaaagtgagaaaccgcttgataagaacaaa 16678751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 140
Target Start/End: Complemental strand, 11921336 - 11921234
Alignment:
Q  38 ctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttcca 137  Q
    |||| |||||||||||||| ||| |  |||  ||| |||| |||||||| || || || ||||| |||||||||||||||| |||||| |||||||||||    
T  11921336 cttttttaagactcagtggaaccttgaaagctaactaagaggccgtaaggctacacctctttcctttttccttaagggatagagctagtgcttggttcca 11921237  T
Q  138 ttc 140  Q
    |||    
T  11921236 ttc 11921234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 5435 - 5393
Alignment:
Q  176 caagggagagagtgttaagcatctaggtgagaatgatgtgata 218  Q
    |||||||||||||||||||| |||||||||||| |||| ||||    
T  5435 caagggagagagtgttaagcttctaggtgagaaggatgcgata 5393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 34 - 159
Target Start/End: Original strand, 25031 - 25156
Alignment:
Q  34 tcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggt 133  Q
    ||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||| |||| |    
T  25031 tcttccttcttaagactcagtggcactataaaagagaaccaagaagccgtaagacttcatccctttcccttttccttaagggatagagctagctcttgat 25130  T
Q  134 tccattctctataagctggttccatc 159  Q
    ||||||||||| ||| ||||||||||    
T  25131 tccattctctaaaagttggttccatc 25156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 34 - 159
Target Start/End: Complemental strand, 368386 - 368261
Alignment:
Q  34 tcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggt 133  Q
    ||||| ||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  368386 tcttccttcttaagactcaatggcactataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcgcttggt 368287  T
Q  134 tccattctctataagctggttccatc 159  Q
    ||||||| ||| |||  |||||||||    
T  368286 tccattccctagaagtcggttccatc 368261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 21852 - 21781
Alignment:
Q  177 aagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||||||||| || | | ||| |||| ||||||||||||||||||||| |||||||||||||||||    
T  21852 aagggagagagtgttaggcttttgggtaagaaagatgtgatagaaagtgagaaaacgcttgataagaacaaa 21781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 367271 - 367227
Alignment:
Q  176 caagggagagagtgttaagcatctaggtgagaatgatgtgataga 220  Q
    |||||||||||||||||||| |||| ||||||| |||||||||||    
T  367271 caagggagagagtgttaagcttctaagtgagaaggatgtgataga 367227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0630 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: scaffold0630
Description:

Target: scaffold0630; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 6629 - 6760
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||||||||||| |||||||||||  |||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||    
T  6629 catatttcttccttcttaagacttagtggcaccattaaagagaaccaagaagcggtaagacttcatctctttcccttttccttaagggatagagctagcg 6728  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||| ||| |||  |||||||||    
T  6729 cttggttccattccctagaagtcggttccatc 6760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0630; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 463 - 594
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||||||  |||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||    
T  463 catatttcttccttccttagactcagtggcaccattaaagagaaccaagaagcggtaagacttcatctctttcccttttccttaagggatagagctagcg 562  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||| ||| |||  |||||||||    
T  563 cttggttccattccctagaagtcggttccatc 594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0506 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: scaffold0506
Description:

Target: scaffold0506; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 46 - 159
Target Start/End: Complemental strand, 6696 - 6583
Alignment:
Q  46 agactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattctctat 145  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||     
T  6696 agactcagtggcactataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcgcttggttccattccctag 6597  T
Q  146 aagctggttccatc 159  Q
    |||  |||||||||    
T  6596 aagtcggttccatc 6583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0506; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 10382 - 10453
Alignment:
Q  177 aagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  10382 aaggaagagagtgttaagcttctaggtgagaatgatgtgatagaaagtgagaaacctcttgataagaccaaa 10453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0506; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 5986 - 5915
Alignment:
Q  177 aagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||||||||| || ||||||| |||| ||||||||||||||| |||||||||||||||||||||||    
T  5986 aagggagagagtgttaggcttctaggtaagaaagatgtgatagaaagtaagaaaccgcttgataagaacaaa 5915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 34 - 159
Target Start/End: Original strand, 187408 - 187533
Alignment:
Q  34 tcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggt 133  Q
    ||||| ||||||||||  |||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||    
T  187408 tcttccttcttaagacctagtggcactataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcgcttagt 187507  T
Q  134 tccattctctataagctggttccatc 159  Q
    ||||||| ||| |||  |||||||||    
T  187508 tccattccctagaagtcggttccatc 187533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0346 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: scaffold0346
Description:

Target: scaffold0346; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 1357 - 1226
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||| ||| |||||||||||||||||||||| |||||||| ||||||||||||||||||| || ||||||||    
T  1357 catatttcttccttccttagactcagtggcactataaaagagaaccaagaagccgtaaggcttcatctctttcccttttccttaaggggtagagctagcg 1258  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||| ||| |||  |||||||||    
T  1257 cttggttccattccctagaagtcggttccatc 1226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0346; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 7373 - 7307
Alignment:
Q  177 aagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataaga 243  Q
    ||||||||||||||||||| | ||||  |||| |||||||||||||||||||||  |||||||||||    
T  7373 aagggagagagtgttaagcttttaggatagaaagatgtgatagaaagtgagaaattgcttgataaga 7307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 2517 - 2386
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||  ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||     
T  2517 catatttcttccttccttagactttgtggcaccataaaagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagct 2418  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||| ||| |||  |||||||||    
T  2417 cttggttccattccctagaagtcggttccatc 2386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 1675 - 1544
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||| ||||| ||| | |||||||||||||| ||| || |||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||| |    
T  1675 catatttcttccttccttagactcagtggcactataaaacagaaccaagaagccataagacttcatctctttcccttttccttaagggatagagctaggg 1576  T
Q  128 cttggttccattctctataagctggttccatc 159  Q
    ||||||||||||| ||| |||  |||||||||    
T  1575 cttggttccattccctagaagtcggttccatc 1544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 643 - 607
Alignment:
Q  212 tgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  643 tgtgatagaaagtgagaaaccacttgatgagaacaaa 607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 158
Target Start/End: Original strand, 34698 - 34791
Alignment:
Q  65 aagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattctctataagctggttccat 158  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| |||  ||||||||    
T  34698 aagagaaccaagaagccgtaagacttcatctctttcccttttccttaagggatagagctagcgcttggttccattccctagaagtcggttccat 34791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 35779 - 35821
Alignment:
Q  176 caagggagagagtgttaagcatctaggtgagaatgatgtgata 218  Q
    |||||||||||||||||||| |||||||||||| |||| ||||    
T  35779 caagggagagagtgttaagcttctaggtgagaaggatgcgata 35821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 139
Target Start/End: Complemental strand, 7039 - 6946
Alignment:
Q  46 agactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccatt 139  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||| |  ||||||||||||    
T  7039 agactcagtggcaccataaaagagaaccaagaagccttaagacttcatctctttcccttttccttaagggatagagcttgttcttggttccatt 6946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1058 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold1058
Description:

Target: scaffold1058; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 852 - 781
Alignment:
Q  177 aagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  852 aagggagagagtgttaagcttctaggtgagaatgatgtgatagaaagtgaaaaaccgcttgataagaccaaa 781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1058; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 140
Target Start/End: Complemental strand, 1973 - 1861
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||||||  |||||||||||||||| || ||  |  ||| ||| |||||||||||||| || || || ||||| || ||||||||||||| |||||| |    
T  1973 catatctcaactttcttaagactcagcggaactttgaaagcgaatcaagaagccgtaaggctgcaactctttcctttctccttaagggatagagctagtg 1874  T
Q  128 cttggttccattc 140  Q
    ||| | |||||||    
T  1873 cttaggtccattc 1861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 36756 - 36679
Alignment:
Q  171 aataccaagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    ||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||| || |||||||||||||    
T  36756 aataccaagggagagagtgttaagcttttaggtgagaaagatgtgatagaaagtgagaaactgcatgataagaacaaa 36679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 75154 - 75242
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaaggga 116  Q
    ||||| ||||| ||| ||||||| |||||||| ||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  75154 catatttcttccttcataagactaagtggcacaataaaagagaaccaagaagccgtaagacttcatctctttccattttccttaaggga 75242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0326 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0326
Description:

Target: scaffold0326; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 17631 - 17702
Alignment:
Q  177 aagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||||||||| || | ||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  17631 aagggagagagtgttaggcttttaggtaagaaagatgtgatagaaagtgagaaaccgcttgataagaacaaa 17702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 10340 - 10269
Alignment:
Q  177 aagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||||||||| || | ||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  10340 aagggagagagtgttaggcttttaggtaagaaagatgtgatagaaagtgagaaaccgcttgataagaacaaa 10269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 16363 - 16437
Alignment:
Q  85 agacttcatctttttcccttttccttaagggataaagctagcgcttggttccattctctataagctggttccatc 159  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| |||  |||||||||    
T  16363 agacttcatctctttcccttttccttaagggatagagctagcgcttggttccattccctagaagtcggttccatc 16437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 51805 - 51733
Alignment:
Q  176 caagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||||||||||||  |||||||||||| ||||||||||| ||||||||||||||||| || ||||||    
T  51805 caagggagagagtgttaagtttctaggtgagaaagatgtgatagagagtgagaaaccgcttgacaaaaacaaa 51733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 521947 - 522049
Alignment:
Q  38 ctttcttaagactcagtggcaccatagaaga-gaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttcc 136  Q
    ||||||| ||||||||||| ||| ||||||  ||||||||| || ||||| || ||||| ||||| ||||||||||||||||  ||||| ||||||||||    
T  521947 ctttcttcagactcagtggaacc-tagaaggcgaaccaagaggctgtaaggctacatctctttcctttttccttaagggatagcgctagtgcttggttcc 522045  T
Q  137 attc 140  Q
    ||||    
T  522046 attc 522049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0467 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0467
Description:

Target: scaffold0467; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 9329 - 9258
Alignment:
Q  177 aagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||||||||| || | ||||| |||| |||| ||||||||||||||||||||||||||||||||||    
T  9329 aagggagagagtgttaggcttttaggtaagaaagatgcgatagaaagtgagaaaccgcttgataagaacaaa 9258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 39321 - 39392
Alignment:
Q  177 aagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||||||||| || | ||||| |||| || ||||||||||||||||||||||||||||||||||||    
T  39321 aagggagagagtgttaggcttttaggtaagaaagaagtgatagaaagtgagaaaccgcttgataagaacaaa 39392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0375 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0375
Description:

Target: scaffold0375; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 382 - 457
Alignment:
Q  173 taccaagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||||| ||| |||||| | |||||||||| ||||||||||| ||| ||||||| |||||||||||||||    
T  382 taccaagggagatagttttaagcttttaggtgagaaagatgtgatagagagttagaaaccacttgataagaacaaa 457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0404 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0404
Description:

Target: scaffold0404; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 2862 - 2966
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttcc-ttaagggataaagctagc 126  Q
    ||||| ||||| ||| | |||||||||||||||||| |||||||||||||  || ||||| |||||||| ||||| ||||| |||| ||||| ||||| |    
T  2862 catatttcttccttccttagactcagtggcaccataaaagagaaccaagacaccataagatttcatcttcttcccctttcctttaacggatacagctaac 2961  T
Q  127 gcttg 131  Q
    |||||    
T  2962 gcttg 2966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 6433 - 6475
Alignment:
Q  205 agaatgatgtgatagaaagtgagaaaccgcttgataagaacaa 247  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  6433 agaaagatgtgatagaaagtgagaaaccgcttgataagaacaa 6475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 117261 - 117305
Alignment:
Q  176 caagggagagagtgttaagcatctaggtgagaatgatgtgataga 220  Q
    |||||||||||||||||||| |||||||||||| |||||||||||    
T  117261 caagggagagagtgttaagcttctaggtgagaaagatgtgataga 117305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 28300 - 28229
Alignment:
Q  177 aagggagagagtgttaagcatctaggtgagaatgatgtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||||||||||||| || | |  || ||||  |||||||||||||||||||||||||||| |||||||||    
T  28300 aagggagagagtgttaggcttttgagtaagaagaatgtgatagaaagtgagaaaccgcttgacaagaacaaa 28229  T

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Target: scaffold0833 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0833
Description:

Target: scaffold0833; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 1254 - 1208
Alignment:
Q  176 caagggagagagtgttaagcatctaggtgagaatgatgtgatagaaa 222  Q
    |||||||||||||| ||||| |||||||||||| |||||||||||||    
T  1254 caagggagagagtgctaagcttctaggtgagaaggatgtgatagaaa 1208  T

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Target: scaffold0029 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 119123 - 119193
Alignment:
Q  70 aaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggttccattc 140  Q
    |||||||| |||||||| || || || ||||| |||||||||||||||| |||||| |||||||| |||||    
T  119123 aaccaagaggccgtaaggctgcacctctttcctttttccttaagggatagagctagtgcttggtttcattc 119193  T

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Target: scaffold1092 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1092
Description:

Target: scaffold1092; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 140
Target Start/End: Complemental strand, 596 - 484
Alignment:
Q  28 catatctcttctttcttaagactcagtggcaccatagaagagaaccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcg 127  Q
    ||||||||  |||||||||||||||| || ||  |  ||| ||| |||||||||||||| || || || ||||| || ||||||||||||| |||||| |    
T  596 catatctcaactttcttaagactcagcggaactttgaaagcgaatcaagaagccgtaaggctgcaactctttcctttctccttaagggatagagctagtg 497  T
Q  128 cttggttccattc 140  Q
    ||| | |||||||    
T  496 cttaggtccattc 484  T

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Target: scaffold0367 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0367
Description:

Target: scaffold0367; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 248
Target Start/End: Complemental strand, 2617 - 2582
Alignment:
Q  213 gtgatagaaagtgagaaaccgcttgataagaacaaa 248  Q
    |||||| |||||||||||||||||||||||||||||    
T  2617 gtgataaaaagtgagaaaccgcttgataagaacaaa 2582  T

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Target: scaffold0175 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 11441 - 11379
Alignment:
Q  72 ccaagaagccgtaagacttcatctttttcccttttccttaagggataaagctagcgcttggtt 134  Q
    |||||| |||||||| || || || ||||| |||||||||||||||| |||||| ||||||||    
T  11441 ccaagaggccgtaaggctgcacctctttcctttttccttaagggatagagctagtgcttggtt 11379  T

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Target: scaffold0075 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 45016 - 44974
Alignment:
Q  176 caagggagagagtgttaagcatctaggtgagaatgatgtgata 218  Q
    |||||||||||||||||||| |||||||||||| |||| ||||    
T  45016 caagggagagagtgttaagcttctaggtgagaaggatgcgata 44974  T

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