View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0602_high_4 (Length: 432)
Name: NF0602_high_4
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 195 - 403
Target Start/End: Complemental strand, 26623786 - 26623579
Alignment:
| Q |
195 |
ctaaaacaaacatgcccatatattttcaactaaaaatctatttttcacctctaaccaacttttttgactcaacagctttaactattaattattatttgtc |
294 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26623786 |
ctaaaacaaacatgcc-atatattttcaactaaaaatctatttttcacctctaaccaacttttttgactcaacagctttaactattaattattttttgtc |
26623688 |
T |
|
| Q |
295 |
aaactttagaagtaggtcatatctttttgtggaatacaagtaggtcatattctttgttgactggcaagcagttaaattaagagtgtcttaattgagcaat |
394 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26623687 |
aaactttacaagtaggtcatatctttttgtggaatacaagtaggtcatattctttgttgactggcaagcagttaaattaagagtgtcttaattgagcaat |
26623588 |
T |
|
| Q |
395 |
aatgctttg |
403 |
Q |
| |
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||||||||| |
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| T |
26623587 |
aatgctttg |
26623579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 26623977 - 26623852
Alignment:
| Q |
1 |
attttgtctatataaaatctccaaaaatgaatatttaaaataatgaatttaaaatcttttgtaacttctctcnnnnnnnntaaaatc-tttttaacttat |
99 |
Q |
| |
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|||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||||| ||||||| |||||||||||| |
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| T |
26623977 |
attttgtctatataaa---tccaacaatgaatatttaaattaatgaatttaaaatcttttttaacttctctcaaaaaaaataaaatcttttttaacttat |
26623881 |
T |
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| Q |
100 |
aacaatcgagcttaaaataacttttacta |
128 |
Q |
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| ||| ||||||||||||||||||||||| |
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| T |
26623880 |
accaaacgagcttaaaataacttttacta |
26623852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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