View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0602_low_1 (Length: 659)
Name: NF0602_low_1
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 560; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 1 - 572
Target Start/End: Original strand, 3302781 - 3303352
Alignment:
| Q |
1 |
agggacctcccacaaagcaaaccaaagcatatcaagaattctgatttactttcaatgtagcagcttccaccgatcaaaatcttattacatcaatccccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3302781 |
agggacctcccacaaagcaaaccaaagcatatcaagaactctgatttactttcaatgtagcagcttccactgatcaaaatcttattacatcaatccccta |
3302880 |
T |
|
| Q |
101 |
aagagtgaccgctatttatatacgctatcatgaaaggagaggctttgtagaaattgttcggttgattcaacataatattcagagttttgcacaaagcaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3302881 |
aagagtgaccgctatttatatacgctatcatgaaaggagaggctttgtagaaattgttcggttgattcaacataatattcagagttttgcacaaagcaat |
3302980 |
T |
|
| Q |
201 |
tgcaaacgcaaggctttggtaaccatctcatttgactgaggtgtgtaactcggtaggagttaaaattattggtaacaagcaaattcggccctcccctgct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3302981 |
tgcaaacgcaaggctttggtaaccatctcatttgactgaggtgtgtaactcggtaggagttaaaattattggtaacaagcaaattcggccctcccctgct |
3303080 |
T |
|
| Q |
301 |
gtcaccaattgctgccatcacctaggcctgctggcttctcctcctttttctgttgctatcaatgttgtcaaaatcaatatttacctagggttgagacttg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3303081 |
gtcaccaattgctgccatcacctaggcctgctggcttctcctcctttttctgttgctatcaatgttgtcaaaatcaatatttacctagggttgagacttg |
3303180 |
T |
|
| Q |
401 |
agagtgggtgaatgataataataggattgtggcacagattctaagttccttcttaaaattcaaaatgttaccttaaacactcacgcacatgcctgataga |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3303181 |
agagtgggtgaatgataataataggattgtggcacagattctaagttccttcttaaaattcaaaatgttaccttaaacactcacgcacatgcctgataga |
3303280 |
T |
|
| Q |
501 |
aaataagtaataacatagataagcaaaatgacctctaaatcatattcacaaggtcacatacaactgatgatg |
572 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3303281 |
aaataagtaataacatagataagcaaaatgacctctaaatcatattcacaaggtcacatacaactcatgatg |
3303352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 160 - 283
Target Start/End: Original strand, 3291074 - 3291197
Alignment:
| Q |
160 |
ggttgattcaacataatattcagagttttgcacaaagcaattgcaaacgcaaggctttggtaaccatctcatttgactgaggtgtgtaactcggtaggag |
259 |
Q |
| |
|
||||||||| |||| ||||||||| ||||||||||||||| | ||||| ||||||||| ||||||||||||| ||||| ||||| | |||| |||| |
|
|
| T |
3291074 |
ggttgattccacattatattcagaattttgcacaaagcaaagccgaacgctgggctttggttaccatctcatttgcctgagttgtgtgaggcggttggag |
3291173 |
T |
|
| Q |
260 |
ttaaaattattggtaacaagcaaa |
283 |
Q |
| |
|
|| ||||||||||| ||||||||| |
|
|
| T |
3291174 |
ttgaaattattggtgacaagcaaa |
3291197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2249 times since January 2019
Visitors: 3815