View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0602_low_11 (Length: 417)
Name: NF0602_low_11
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 30 - 410
Target Start/End: Original strand, 5887682 - 5888063
Alignment:
| Q |
30 |
ggcttagcttaagaacagaataggttgcattaaattatgaaatgaatggagtgagaagagtaacagnnnnnnnggatgatttataagcagatgaaacttt |
129 |
Q |
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| T |
5887682 |
ggcttagcttaagaacagaataggttgcattaaattatgaaatgaatggagtgagaagagtaacagaaaaaaaggatgatttataagcagatgaaacttt |
5887781 |
T |
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| Q |
130 |
gagtacactgaggtggtcagggggaaaggccatatagttcaataatgagctaccccatattcttcttgttannnnnnncttatacttttatatttagcta |
229 |
Q |
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| T |
5887782 |
gagtacactgaggtggtcagggggaaaggccatatagttcaataatgagctaccccatattcttcttgttatttttttcttatacttttatatttagcta |
5887881 |
T |
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| Q |
230 |
tcttaataatgtttatctagctatcccaatcaagtttctttgcaag----nnnnnnnnntcacttaattgataaatttattcatcttattttgacacttc |
325 |
Q |
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| T |
5887882 |
tcttaataatgtttatctagctatcccaatcaagtttctttgcaagaaaaaaaataaaatcacttaattgataaatttattcatcttattttgacacttc |
5887981 |
T |
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| Q |
326 |
aaatcnnnnnnnngttaactctccggtagccaaggagaaggagaccctaatattctagaattcgtccgtgaagtaagtataatct |
410 |
Q |
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| T |
5887982 |
aaatcttttttttgt---ctctccggtagccaaggagaaggagaccctaatattctagaattcgtccgtgaagtaagtataatct |
5888063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 33 - 199
Target Start/End: Original strand, 5850299 - 5850461
Alignment:
| Q |
33 |
ttagcttaagaacagaataggttgcattaaattatgaaatgaatggagtgagaagagtaacagnnnnnnnggatgatttataagcagatgaaactttgag |
132 |
Q |
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| T |
5850299 |
ttagctttagaatagaacaggttgcattaaattatgaaatgaatggattgagaagagtaacagaaaaaaggg-tgatttataagcagatgaaactgtgat |
5850397 |
T |
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| Q |
133 |
tacactgaggtggtcagggggaaaggccatatagttcaataatgagctaccccatattcttcttgtt |
199 |
Q |
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| T |
5850398 |
tacactgaggtggtc-ggagaaaaagcc--atagttcagtaaagagctaccacatattcttcttgtt |
5850461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 5843557 - 5843650
Alignment:
| Q |
33 |
ttagcttaagaacagaataggttgcattaaattatgaaatgaatggagtgagaagagtaacagnnnnnnnggatgatttataagcagatgaaact |
127 |
Q |
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| T |
5843557 |
ttagctttagaatagaacaggttgcattaaattatgaaatgaatggattgagaagagtaacagaaaaaaggg-tgatttataagcagatgaaact |
5843650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 5850507 - 5850571
Alignment:
| Q |
211 |
atacttttatatttagctatcttaataatgtttatctagctatcccaatcaagtttctttgcaag |
275 |
Q |
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| T |
5850507 |
atacttttatatttagttaacctaataatgtttatctagctaccccaatcaagtttatttgcaag |
5850571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 324
Target Start/End: Original strand, 5850588 - 5850627
Alignment:
| Q |
285 |
tcacttaattgataaatttattcatcttattttgacactt |
324 |
Q |
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| T |
5850588 |
tcacttaattgataaatttattcttcttattttgacactt |
5850627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 5985016 - 5985066
Alignment:
| Q |
33 |
ttagcttaagaacagaataggttgcattaaattatgaaatgaatggagtga |
83 |
Q |
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| T |
5985016 |
ttagcttaagaatagaatatgttgcattaaattatgaaaagaatggtgtga |
5985066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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