View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0602_low_12 (Length: 417)
Name: NF0602_low_12
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602_low_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 27 - 417
Target Start/End: Original strand, 38823013 - 38823394
Alignment:
| Q |
27 |
cacagaaatgaaaaccatgtatatatacacacacaccacagcctcaaannnnnnnnnnnnnnnnn-gacaaaacaacctcaaaattaatgttttcagcta |
125 |
Q |
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| T |
38823013 |
cacagaaatgaaaaccatgtatatatacacacacaccacaacctcaaatttttttaatttttttttgacaaaacaacctcaaaattaatgttttcagcta |
38823112 |
T |
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| Q |
126 |
ttttggaaataaaatactccctaataaatttcaaaaatcaaaaagagaactaccccttttgactcggttatgataaaaaatggtaattaagttaaaatat |
225 |
Q |
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| T |
38823113 |
ttttggaaataaaatactccctaataaatttcaaaaatcaaaaagagaactaccccttttgactcggttatgataaaaaatggtaattaagttaaaatat |
38823212 |
T |
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| Q |
226 |
ttccttttttatacgaaatcaagaaaaataaatgtacttacctatctttcttttttcttttccctcaaaaaagggaatgatagttgaatatattgaattt |
325 |
Q |
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| T |
38823213 |
ttccttttttatacgaaatcaagaaaaataaatgtacttacctatctttcttttttcttttccctcaaaaaagggaatgatagttgaatatattgaattt |
38823312 |
T |
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| Q |
326 |
tcccgatttcataagaaattcttttactaacttagccctaattataatgattatcccttccgaacaaaatgtgaagaaaacctacaagttca |
417 |
Q |
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| T |
38823313 |
tcccgatttcataaggca------aaacaact----cccaattataatgattatcccttccgaacaaaatgtgaagaaaacctacaagttca |
38823394 |
T |
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