View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0602_low_13 (Length: 413)
Name: NF0602_low_13
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 26926511 - 26926174
Alignment:
| Q |
1 |
ttcaacttctgttgttatcgttagagctcataattttacatgttaatcaacttcttatcaactaagtcacgttcatttatttagaggtttcgattttctt |
100 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||| |
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| T |
26926511 |
ttcaacttcttctgttatcgttagaactcataattttacatgttaatcaacttcttatcaactaagtcacgttcattcatctagaggtttcaattttctt |
26926412 |
T |
|
| Q |
101 |
accatttaaacaaatttatcgttggtataagattcaaattggaaccttatgnnnnnnntatt--ttactcttatatagaatcatgttaaaaaa-tgttac |
197 |
Q |
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| T |
26926411 |
accatttaaacaaatttattgttggtataagattcaaattgtaacctcatgaaaaaaaaaaaaattactcttatatagaatcatgttaaaaaaatgttac |
26926312 |
T |
|
| Q |
198 |
caattataaaatcttttatttaggacatttaatttattctttaatgtattttcattcttagatattagctgtcatgtggatgtatagcaacaaacattgc |
297 |
Q |
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| T |
26926311 |
caattataaaatcttttatttaggacatttaatttattctttaatgtattttcattcttagatattagctgtcatgtggatgtatagcaacaaacattgc |
26926212 |
T |
|
| Q |
298 |
acatacatgaaataaacctcaagatattactacatgca |
335 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
26926211 |
acatacatgaaataaacctcaagatattactacatgca |
26926174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 27 - 331
Target Start/End: Original strand, 26926512 - 26926814
Alignment:
| Q |
27 |
ctcataattttacatgttaatcaacttcttatcaactaagtcacgttcatttatttagaggtttcgattttcttaccatttaaacaaatttatcgttggt |
126 |
Q |
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||||||||||||||||||| |||| |||||||||||||| ||| | ||||| || ||||||||||||||||| || |||||||| ||||||||||||||| |
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| T |
26926512 |
ctcataattttacatgttagtcaatttcttatcaactaaatcatgctcattcatctagaggtttcgattttcgtaacatttaaaaaaatttatcgttggt |
26926611 |
T |
|
| Q |
127 |
ataagattcaaattggaaccttatgnnnnnnntattttactcttatatagaatcatgttaaaaaatgttaccaattataaaatcttttatttaggacatt |
226 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||| ||| | |
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| T |
26926612 |
ataagattcaaattggaaccttatgaaaaaaatattttactcttatatagaatcatgttaaaaaatgttaccaaatttaaaatattttatttagaaca-t |
26926710 |
T |
|
| Q |
227 |
taatttattctttaatgtattttcattcttagatattagctgtcatgtggatgtatagcaacaaacattgcacatacatgaaataaacctcaagatatta |
326 |
Q |
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| T |
26926711 |
taatttattcttgaatgttttttcattcttagatattagctgtcatg-ggatgtatagcatcaaacattgcacatacatgaaataaacctcaagatatta |
26926809 |
T |
|
| Q |
327 |
ctaca |
331 |
Q |
| |
|
||||| |
|
|
| T |
26926810 |
ctaca |
26926814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 336 - 404
Target Start/End: Complemental strand, 26926004 - 26925936
Alignment:
| Q |
336 |
aacaccgagcctatttcaaattatgatgagaagatcccttctagaagttaaaatggagcaaagtattat |
404 |
Q |
| |
|
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| T |
26926004 |
aacactgagcctatttcaaattatgatgagaagatcccttctagaagttaaagtggagcaaagtattat |
26925936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 6e-50; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 28 - 235
Target Start/End: Original strand, 50104324 - 50104535
Alignment:
| Q |
28 |
tcataattttacatgttaatcaacttcttatcaactaagtcacgt--tcatttatttagaggtttcgattttcttaccatttaaacaaatttatcgttgg |
125 |
Q |
| |
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||||||||||||| |||| ||| |||||||||||||||||| || ||||| || |||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
50104324 |
tcataattttacaggttagccaatttcttatcaactaagtcatgtgttcattcatctagaggtttcaaatttcttaccatttaaacaaatttatcgttgg |
50104423 |
T |
|
| Q |
126 |
tataagattcaaattggaaccttatg--nnnnnnntattttactcttatatagaatcatgttaaaaaatgttaccaattataaaatcttttatttaggac |
223 |
Q |
| |
|
||||||||||| |||| ||||||||| ||||||| |||||||||||||||||||||||||||| ||| | | ||||||||||||||| |||| |
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| T |
50104424 |
tataagattcatattgtaaccttatgaaaaatatctattttaatcttatatagaatcatgttaaaaaatgtaacctaatttaaaatcttttatttcggac |
50104523 |
T |
|
| Q |
224 |
atttaatttatt |
235 |
Q |
| |
|
|||||||||||| |
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|
| T |
50104524 |
atttaatttatt |
50104535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 181 - 316
Target Start/End: Complemental strand, 47421475 - 47421339
Alignment:
| Q |
181 |
atgttaaaaaatgttaccaattataaaatcttttatttaggacatttaatttattctttaatgtattttcattcttagatattagctgtcatgtggatgt |
280 |
Q |
| |
|
|||||||||||||||| | | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||| |
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|
| T |
47421475 |
atgttaaaaaatgttatcgaattcaaaatcttttatttaggacatttaatttattctttaatgtattttcattcttagatattagctgccatg-ggctgt |
47421377 |
T |
|
| Q |
281 |
atagcaacaaacattg--cacatacatgaaataaacct |
316 |
Q |
| |
|
||||| ||||| ||| ||||||| |||||||||||| |
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|
| T |
47421376 |
gtagcatcaaactttgcacacatacgtgaaataaacct |
47421339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 47421606 - 47421550
Alignment:
| Q |
95 |
tttcttaccatttaaacaaatttatcgttggtataagattcaaattggaaccttatg |
151 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| || |||||| |
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|
| T |
47421606 |
tttcttaccatttaaacaaatttaatgttggtataagattcaaattgtaatcttatg |
47421550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 47421749 - 47421703
Alignment:
| Q |
95 |
tttcttaccatttaaacaaatttatcgttggtataagattcaaattg |
141 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
47421749 |
tttcttaccatttaaacaaatttaatgttggtataagattcaaattg |
47421703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 262
Target Start/End: Original strand, 50105455 - 50105487
Alignment:
| Q |
230 |
tttattctttaatgtattttcattcttagatat |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
50105455 |
tttattctttaatgtattttcattcttagatat |
50105487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 47422284 - 47422229
Alignment:
| Q |
53 |
tcttatcaactaagtcacgttcatttatttagaggtttcgattttcttaccattta |
108 |
Q |
| |
|
||||||||||| ||||| ||||||| || |||||||||| | |||||||||||||| |
|
|
| T |
47422284 |
tcttatcaacttagtcatgttcattcatctagaggtttcaaatttcttaccattta |
47422229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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