View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0602_low_17 (Length: 374)
Name: NF0602_low_17
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 33 - 349
Target Start/End: Original strand, 39293645 - 39293965
Alignment:
| Q |
33 |
cagagaaattgttgtgctgttagaaagagtcatag-gagacgtaaatatttagtggattactaataaaatttcatgttctgtttagattttttaattgaa |
131 |
Q |
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| T |
39293645 |
cagagaaattgttgtgctgttagaaagagtcatagtgagacgtaaatatttagtggattactaataaaatttcatgttctgtttagattttttaattgaa |
39293744 |
T |
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| Q |
132 |
ggattatacgtactcatatctttattatatcgatctatttctcttttgact---gactgagtcatatatagctgcctaaacgtgttattttgattcctat |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39293745 |
ggattatacgtactcatatctttattatatcgatctatttctcttttgactcatgactgagtcatatatagctgcctaaacgtgttattttgattcctat |
39293844 |
T |
|
| Q |
229 |
ttaaacgtaagagtttgtacattacttgttaatgaatccttcttaacatgttttgtctgtcgatgagtaagggaaacgataggcacaatggtttgatcat |
328 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39293845 |
ttaaacgttagagtttgtacattacttgttaatgaatccttcttaacatgttttgtctgtcgatgagtaagggaaacgataggcacaatggtttgatcat |
39293944 |
T |
|
| Q |
329 |
tccaaagacaaagaatgccac |
349 |
Q |
| |
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||||||||||||||||||||| |
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| T |
39293945 |
tccaaagacaaagaatgccac |
39293965 |
T |
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