View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0602_low_18 (Length: 362)
Name: NF0602_low_18
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 3302781 - 3303132
Alignment:
| Q |
1 |
agggacctcccacaaagcaaaccaaagcatatcaagaattctgatttactttcaatgtagcagcttccaccgatcaaaatcttattacatcaatccccta |
100 |
Q |
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| T |
3302781 |
agggacctcccacaaagcaaaccaaagcatatcaagaactctgatttactttcaatgtagcagcttccactgatcaaaatcttattacatcaatccccta |
3302880 |
T |
|
| Q |
101 |
aagagtgaccgctatttatatacgctatcatgaaaggagaggctttgtagaaattgttcggttgattcaacataatattcagagttttgcacaaagcaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3302881 |
aagagtgaccgctatttatatacgctatcatgaaaggagaggctttgtagaaattgttcggttgattcaacataatattcagagttttgcacaaagcaat |
3302980 |
T |
|
| Q |
201 |
tgcaaacgcaaggctttggtaaccatctcatttgactgaggtgtgtaactcggtaggagttaaaattattggtaacaagcaaattcggccctcccctgct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3302981 |
tgcaaacgcaaggctttggtaaccatctcatttgactgaggtgtgtaactcggtaggagttaaaattattggtaacaagcaaattcggccctcccctgct |
3303080 |
T |
|
| Q |
301 |
gtcaccaattgctgccatcacctaggcctgctggcttctcctcctttctctg |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3303081 |
gtcaccaattgctgccatcacctaggcctgctggcttctcctcctttttctg |
3303132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 160 - 283
Target Start/End: Original strand, 3291074 - 3291197
Alignment:
| Q |
160 |
ggttgattcaacataatattcagagttttgcacaaagcaattgcaaacgcaaggctttggtaaccatctcatttgactgaggtgtgtaactcggtaggag |
259 |
Q |
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||||||||| |||| ||||||||| ||||||||||||||| | ||||| ||||||||| ||||||||||||| ||||| ||||| | |||| |||| |
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| T |
3291074 |
ggttgattccacattatattcagaattttgcacaaagcaaagccgaacgctgggctttggttaccatctcatttgcctgagttgtgtgaggcggttggag |
3291173 |
T |
|
| Q |
260 |
ttaaaattattggtaacaagcaaa |
283 |
Q |
| |
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|| ||||||||||| ||||||||| |
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| T |
3291174 |
ttgaaattattggtgacaagcaaa |
3291197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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