View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0602_low_2 (Length: 549)

Name: NF0602_low_2
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0602_low_2
NF0602_low_2
[»] chr4 (12 HSPs)
chr4 (39-470)||(29150174-29150605)
chr4 (413-462)||(38853881-38853930)
chr4 (409-462)||(2574822-2574875)
chr4 (413-462)||(3381934-3381983)
chr4 (413-462)||(8658017-8658066)
chr4 (413-462)||(19737503-19737552)
chr4 (413-462)||(20548898-20548947)
chr4 (413-462)||(39744920-39744969)
chr4 (409-462)||(39991415-39991468)
chr4 (413-462)||(50188312-50188361)
chr4 (409-462)||(55081186-55081239)
chr4 (413-462)||(55792727-55792776)
[»] chr3 (18 HSPs)
chr3 (7-46)||(1047694-1047733)
chr3 (7-46)||(1088168-1088207)
chr3 (7-46)||(1072504-1072543)
chr3 (413-462)||(14880807-14880856)
chr3 (413-462)||(14892622-14892671)
chr3 (413-464)||(68673-68724)
chr3 (413-464)||(74766-74817)
chr3 (412-463)||(14398081-14398132)
chr3 (413-462)||(8606680-8606729)
chr3 (413-462)||(9524911-9524960)
chr3 (413-462)||(13105135-13105184)
chr3 (413-462)||(13111292-13111341)
chr3 (413-462)||(14887524-14887573)
chr3 (413-462)||(21638054-21638103)
chr3 (413-462)||(23287623-23287672)
chr3 (413-462)||(48060225-48060274)
chr3 (418-462)||(12558375-12558419)
chr3 (418-462)||(16983519-16983563)
[»] chr5 (13 HSPs)
chr5 (413-464)||(26186138-26186189)
chr5 (419-462)||(23349572-23349615)
chr5 (413-462)||(24956330-24956379)
chr5 (413-462)||(24964790-24964839)
chr5 (413-462)||(25041759-25041808)
chr5 (413-462)||(25526707-25526756)
chr5 (413-462)||(25533389-25533438)
chr5 (413-462)||(28844456-28844505)
chr5 (413-462)||(28853066-28853115)
chr5 (413-462)||(30249841-30249890)
chr5 (413-462)||(36448771-36448820)
chr5 (413-462)||(36455155-36455204)
chr5 (413-462)||(37048884-37048933)
[»] chr1 (12 HSPs)
chr1 (413-464)||(19367986-19368037)
chr1 (408-462)||(9352794-9352848)
chr1 (418-462)||(31064513-31064557)
chr1 (419-462)||(3432393-3432436)
chr1 (419-462)||(51968458-51968501)
chr1 (420-462)||(8770162-8770204)
chr1 (408-462)||(9327948-9328002)
chr1 (413-462)||(2416196-2416245)
chr1 (413-462)||(15473359-15473408)
chr1 (419-464)||(20429887-20429932)
chr1 (413-462)||(47108896-47108945)
chr1 (418-462)||(44832045-44832089)
[»] chr8 (10 HSPs)
chr8 (409-462)||(19950376-19950429)
chr8 (409-462)||(19954830-19954883)
chr8 (413-464)||(32000288-32000339)
chr8 (413-464)||(32007257-32007308)
chr8 (409-462)||(4543779-4543832)
chr8 (409-462)||(21640645-21640698)
chr8 (413-462)||(32025144-32025193)
chr8 (413-462)||(39837063-39837112)
chr8 (413-462)||(39845105-39845154)
chr8 (418-462)||(22156479-22156523)
[»] chr7 (6 HSPs)
chr7 (413-462)||(6851505-6851554)
chr7 (409-462)||(29477742-29477795)
chr7 (413-462)||(44412806-44412855)
chr7 (416-462)||(28415656-28415702)
chr7 (418-462)||(4831839-4831883)
chr7 (418-462)||(6897895-6897939)
[»] chr6 (9 HSPs)
chr6 (413-462)||(20452142-20452191)
chr6 (418-462)||(26896976-26897020)
chr6 (409-459)||(32814555-32814605)
chr6 (413-462)||(19714208-19714257)
chr6 (413-462)||(19899476-19899525)
chr6 (413-462)||(20458959-20459008)
chr6 (413-462)||(22232102-22232151)
chr6 (413-462)||(25506023-25506072)
chr6 (413-461)||(3917086-3917134)
[»] scaffold0085 (1 HSPs)
scaffold0085 (413-462)||(18240-18289)
[»] scaffold0043 (1 HSPs)
scaffold0043 (413-462)||(32720-32769)
[»] scaffold0039 (1 HSPs)
scaffold0039 (413-462)||(89363-89412)
[»] scaffold0031 (1 HSPs)
scaffold0031 (413-462)||(33216-33265)
[»] scaffold0027 (1 HSPs)
scaffold0027 (413-462)||(24110-24159)
[»] chr2 (10 HSPs)
chr2 (413-462)||(5870601-5870650)
chr2 (413-462)||(5873743-5873792)
chr2 (413-462)||(15944038-15944087)
chr2 (413-462)||(15952553-15952602)
chr2 (413-462)||(18500748-18500797)
chr2 (413-462)||(35139129-35139178)
chr2 (413-462)||(35147465-35147514)
chr2 (413-462)||(42565429-42565478)
chr2 (413-462)||(42574053-42574102)
chr2 (418-462)||(18972593-18972637)


Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 39 - 470
Target Start/End: Complemental strand, 29150605 - 29150174
Alignment:
Q  39 atccattcaaagaaacataacaaggttttaaattgcagattatagagctgtcgttgcaaaggttttaaatcaatggacacaatcgtcgatattttagaga 138  Q
    ||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  29150605 atccattcaaagaaacagaacaaggttttatattgcatattatagagctgtcgttgcaaaggttttaaatcaatggacacaattgtcgatatttcagaga 29150506  T
Q  139 atcatggtgtaaataacggagatgtgttggaacaagtgcgggtgtgtgaattgaaaaattcttattttccacgtcgggtagattacatacagcactaatg 238  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29150505 atcatggtgtaaataatggagatgtgttggaacaagtgcaggtgtgtgaattgaaaaattcttattttccacgtcgggtagattacatacaacactaatg 29150406  T
Q  239 cttatataggggaggggtcacttttaagggtgtaccatttagggtacacaaatttgtaaatgggtgttgacgcactcaacatgacaacatagaactggac 338  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29150405 tttatataggggagggatcacttttaagggtgtaccatttagggtacacaaatttgtaaatgggtgttgacgcactcaacatgacaacatagaactggac 29150306  T
Q  339 ccaaaaatctaatcaattattttttcaaatttttggttttagccctccctaactcatctcttcaaatacatactcacatcaaaagctctcttgagttatc 438  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||| ||| ||| ||||||||| |||| ||||||||||||||||||||||||||||    
T  29150305 ccaaaaatctaatcaattattttttcgaatttttggttttggccctccttaagtcaactcttcaaacacatgctcacatcaaaagctctcttgagttatc 29150206  T
Q  439 aatgaatttttctctcttctccctttaacttg 470  Q
    ||||||||||||||||||||||||||||||||    
T  29150205 aatgaatttttctctcttctccctttaacttg 29150174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 413 - 462
Target Start/End: Original strand, 38853881 - 38853930
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| |||||||||||||||||||||    
T  38853881 cacaccaaaagttctcttgagttgtcaaagaatttttctctcttctccct 38853930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 462
Target Start/End: Original strand, 2574822 - 2574875
Alignment:
Q  409 tactcacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||||||| ||||||||||| |||| ||| |||| ||||||||||||    
T  2574822 tacttacatcaaaagttctcttgagttgtcaaagaacttttatctcttctccct 2574875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 3381983 - 3381934
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  3381983 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 3381934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Original strand, 8658017 - 8658066
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  8658017 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 8658066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 19737552 - 19737503
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  19737552 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 19737503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Original strand, 20548898 - 20548947
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  20548898 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 20548947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 39744969 - 39744920
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  39744969 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 39744920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 462
Target Start/End: Original strand, 39991415 - 39991468
Alignment:
Q  409 tactcacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||||||| |||||| |||||| |||| |||| ||| |||||||||||||||||    
T  39991415 tactcacaccaaaagttctctttagttgtcaaagaacttttctctcttctccct 39991468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Original strand, 50188312 - 50188361
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  50188312 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 50188361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 462
Target Start/End: Original strand, 55081186 - 55081239
Alignment:
Q  409 tactcacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    ||||||||  ||||| ||||||||||| |||| || ||||||||||||||||||    
T  55081186 tactcacactaaaagttctcttgagttgtcaaagagtttttctctcttctccct 55081239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 55792776 - 55792727
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||| |||||||||||| ||| |||||||||||||||||    
T  55792776 cacaccaaaagttctattgagttatcaaagaacttttctctcttctccct 55792727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 1047733 - 1047694
Alignment:
Q  7 agaagaacatagcatttacctactgtggaagcatccattc 46  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1047733 agaagaacatagcatttacctactgtggaagcatccattc 1047694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 1088207 - 1088168
Alignment:
Q  7 agaagaacatagcatttacctactgtggaagcatccattc 46  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1088207 agaagaacatagcatttacctactgtggaagcatccattc 1088168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 1072543 - 1072504
Alignment:
Q  7 agaagaacatagcatttacctactgtggaagcatccattc 46  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  1072543 agaagaatatagcatttacctactgtggaagcatccattc 1072504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 14880856 - 14880807
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    ||||||||||| ||||||||||| |||| ||| |||||||||||||||||    
T  14880856 cacatcaaaagttctcttgagttgtcaaagaacttttctctcttctccct 14880807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 14892671 - 14892622
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    ||||||||||| ||||||||||| |||| ||| |||||||||||||||||    
T  14892671 cacatcaaaagttctcttgagttgtcaaagaacttttctctcttctccct 14892622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 464
Target Start/End: Original strand, 68673 - 68724
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctcccttt 464  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||||    
T  68673 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctcccttt 68724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 464
Target Start/End: Original strand, 74766 - 74817
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctcccttt 464  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||||    
T  74766 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctcccttt 74817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 463
Target Start/End: Complemental strand, 14398132 - 14398081
Alignment:
Q  412 tcacatcaaaagctctcttgagttatcaatgaatttttctctcttctccctt 463  Q
    |||||||||||| | ||||||||| ||||  |||||||||||||||||||||    
T  14398132 tcacatcaaaagttatcttgagttgtcaaataatttttctctcttctccctt 14398081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Original strand, 8606680 - 8606729
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  8606680 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 8606729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 9524960 - 9524911
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  9524960 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 9524911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 13105184 - 13105135
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  13105184 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 13105135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 13111341 - 13111292
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  13111341 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 13111292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 14887573 - 14887524
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  14887573 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 14887524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 21638103 - 21638054
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  21638103 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 21638054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 23287672 - 23287623
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  23287672 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 23287623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 48060274 - 48060225
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  48060274 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 48060225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 462
Target Start/End: Original strand, 12558375 - 12558419
Alignment:
Q  418 caaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  12558375 caaaagttctcttgagttgtcaaagaacttttctctcttctccct 12558419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 462
Target Start/End: Complemental strand, 16983563 - 16983519
Alignment:
Q  418 caaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||||| ||||||||||| ||||  ||||||||||||||||||||    
T  16983563 caaaagttctcttgagttgtcaaataatttttctctcttctccct 16983519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 413 - 464
Target Start/End: Complemental strand, 26186189 - 26186138
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctcccttt 464  Q
    |||| |||||| ||||||||||| |||| |||||||||||||||||||||||    
T  26186189 cacaccaaaagttctcttgagttgtcaaagaatttttctctcttctcccttt 26186138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 462
Target Start/End: Complemental strand, 23349615 - 23349572
Alignment:
Q  419 aaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||    
T  23349615 aaaagttctcttgagttgtcaaagaatttttctctcttctccct 23349572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 24956379 - 24956330
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  24956379 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 24956330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 24964839 - 24964790
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  24964839 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 24964790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 25041808 - 25041759
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  25041808 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 25041759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Original strand, 25526707 - 25526756
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  25526707 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 25526756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Original strand, 25533389 - 25533438
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  25533389 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 25533438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Original strand, 28844456 - 28844505
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  28844456 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 28844505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Original strand, 28853066 - 28853115
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  28853066 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 28853115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Original strand, 30249841 - 30249890
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  30249841 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 30249890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Original strand, 36448771 - 36448820
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  36448771 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 36448820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Original strand, 36455155 - 36455204
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  36455155 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 36455204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Original strand, 37048884 - 37048933
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  37048884 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 37048933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 413 - 464
Target Start/End: Original strand, 19367986 - 19368037
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctcccttt 464  Q
    |||| |||||| ||||||||||| |||| |||||||||||||||||||||||    
T  19367986 cacaccaaaagttctcttgagttgtcaaagaatttttctctcttctcccttt 19368037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 462
Target Start/End: Original strand, 9352794 - 9352848
Alignment:
Q  408 atactcacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    ||||||||| |||||| ||||||||||| |||| | |||||||||||||||||||    
T  9352794 atactcacaccaaaagttctcttgagttttcaaagcatttttctctcttctccct 9352848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 462
Target Start/End: Complemental strand, 31064557 - 31064513
Alignment:
Q  418 caaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||||| ||||||||||| |||| |||||||||||||||||||||    
T  31064557 caaaagttctcttgagttgtcaaagaatttttctctcttctccct 31064513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 462
Target Start/End: Complemental strand, 3432436 - 3432393
Alignment:
Q  419 aaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    ||||| ||||||||||| |||||||| |||||||||||||||||    
T  3432436 aaaagttctcttgagttgtcaatgaacttttctctcttctccct 3432393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 462
Target Start/End: Original strand, 51968458 - 51968501
Alignment:
Q  419 aaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||    
T  51968458 aaaagttctcttgagttgtcaaagaatttttctctcttctccct 51968501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 462
Target Start/End: Complemental strand, 8770204 - 8770162
Alignment:
Q  420 aaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| ||||||||||| |||| |||||||||||||||||||||    
T  8770204 aaagttctcttgagttgtcaaagaatttttctctcttctccct 8770162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 462
Target Start/End: Original strand, 9327948 - 9328002
Alignment:
Q  408 atactcacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    ||||| ||| |||||| ||||||||||| |||| | |||||||||||||||||||    
T  9327948 atacttacaccaaaagttctcttgagttttcaaagcatttttctctcttctccct 9328002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 2416245 - 2416196
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  2416245 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 2416196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 15473408 - 15473359
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  15473408 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 15473359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 464
Target Start/End: Original strand, 20429887 - 20429932
Alignment:
Q  419 aaaagctctcttgagttatcaatgaatttttctctcttctcccttt 464  Q
    ||||| ||||||||||| |||| ||| |||||||||||||||||||    
T  20429887 aaaagttctcttgagttgtcaaagaacttttctctcttctcccttt 20429932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Original strand, 47108896 - 47108945
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  47108896 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 47108945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 462
Target Start/End: Complemental strand, 44832089 - 44832045
Alignment:
Q  418 caaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  44832089 caaaagttctcttgagttgtcaaagaacttttctctcttctccct 44832045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 409 - 462
Target Start/End: Complemental strand, 19950429 - 19950376
Alignment:
Q  409 tactcacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    ||||||| ||||||| ||||||||||| |||| ||| |||||||||||||||||    
T  19950429 tactcacctcaaaagttctcttgagttgtcaaagaacttttctctcttctccct 19950376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 409 - 462
Target Start/End: Complemental strand, 19954883 - 19954830
Alignment:
Q  409 tactcacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||||||  |||||| ||||||||||| |||| |||||||||||||||||||||    
T  19954883 tactcaccccaaaagttctcttgagttgtcaaagaatttttctctcttctccct 19954830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 464
Target Start/End: Original strand, 32000288 - 32000339
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctcccttt 464  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||||    
T  32000288 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctcccttt 32000339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 464
Target Start/End: Original strand, 32007257 - 32007308
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctcccttt 464  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||||    
T  32007257 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctcccttt 32007308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 462
Target Start/End: Original strand, 4543779 - 4543832
Alignment:
Q  409 tactcacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||||||  |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  4543779 tactcaccccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 4543832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 462
Target Start/End: Original strand, 21640645 - 21640698
Alignment:
Q  409 tactcacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||||||  |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  21640645 tactcaccccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 21640698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 32025193 - 32025144
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  32025193 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 32025144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 39837112 - 39837063
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  39837112 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 39837063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 39845154 - 39845105
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  39845154 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 39845105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 462
Target Start/End: Complemental strand, 22156523 - 22156479
Alignment:
Q  418 caaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  22156523 caaaagttctcttgagttgtcaaagaacttttctctcttctccct 22156479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 6851554 - 6851505
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    ||||||||||| ||||||||||| |||| ||| |||||||||||||||||    
T  6851554 cacatcaaaagttctcttgagttgtcaaagaacttttctctcttctccct 6851505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 409 - 462
Target Start/End: Original strand, 29477742 - 29477795
Alignment:
Q  409 tactcacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||||||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  29477742 tactcacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 29477795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 44412855 - 44412806
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| |||||||||||||||||||||    
T  44412855 cacaccaaaagttctcttgagttgtcaaagaatttttctctcttctccct 44412806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 462
Target Start/End: Original strand, 28415656 - 28415702
Alignment:
Q  416 atcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||||||| ||||||||||| |||| ||| |||||||||||||||||    
T  28415656 atcaaaagttctcttgagttgtcaaagaacttttctctcttctccct 28415702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 462
Target Start/End: Complemental strand, 4831883 - 4831839
Alignment:
Q  418 caaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  4831883 caaaagttctcttgagttgtcaaagaacttttctctcttctccct 4831839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 462
Target Start/End: Original strand, 6897895 - 6897939
Alignment:
Q  418 caaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  6897895 caaaagttctcttgagttgtcaaagaacttttctctcttctccct 6897939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 20452191 - 20452142
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||||||| |||||||||||||||||    
T  20452191 cacaccaaaagttctcttgagttgtcaatgaacttttctctcttctccct 20452142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 462
Target Start/End: Original strand, 26896976 - 26897020
Alignment:
Q  418 caaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||||| ||||||||||| |||| |||||||||||||||||||||    
T  26896976 caaaagttctcttgagttgtcaaagaatttttctctcttctccct 26897020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 459
Target Start/End: Original strand, 32814555 - 32814605
Alignment:
Q  409 tactcacatcaaaagctctcttgagttatcaatgaatttttctctcttctc 459  Q
    |||||||  |||||| |||||||||||||||| ||| ||||||||||||||    
T  32814555 tactcaccccaaaagttctcttgagttatcaaagaacttttctctcttctc 32814605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Original strand, 19714208 - 19714257
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  19714208 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 19714257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Original strand, 19899476 - 19899525
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  19899476 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 19899525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 20459008 - 20458959
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  20459008 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 20458959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 22232151 - 22232102
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  22232151 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 22232102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 25506072 - 25506023
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  25506072 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 25506023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 461
Target Start/End: Complemental strand, 3917134 - 3917086
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccc 461  Q
    |||| |||||| ||||||||||| |||| ||| ||||||||||||||||    
T  3917134 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccc 3917086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 18289 - 18240
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  18289 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 18240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 32769 - 32720
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||| |||||||||||| ||| |||||||||||||||||    
T  32769 cacaccaaaagttcttttgagttatcaaagaacttttctctcttctccct 32720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 89412 - 89363
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  89412 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 89363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 33265 - 33216
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  33265 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 33216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Original strand, 24110 - 24159
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  24110 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 24159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 5870650 - 5870601
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  5870650 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 5870601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 5873792 - 5873743
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  5873792 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 5873743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 15944087 - 15944038
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  15944087 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 15944038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 15952602 - 15952553
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  15952602 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 15952553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Original strand, 18500748 - 18500797
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  18500748 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 18500797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Original strand, 35139129 - 35139178
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  35139129 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 35139178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Original strand, 35147465 - 35147514
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  35147465 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 35147514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 42565478 - 42565429
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  42565478 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 42565429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 42574102 - 42574053
Alignment:
Q  413 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  42574102 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 42574053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 462
Target Start/End: Complemental strand, 18972637 - 18972593
Alignment:
Q  418 caaaagctctcttgagttatcaatgaatttttctctcttctccct 462  Q
    |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  18972637 caaaagttctcttgagttgtcaaagaacttttctctcttctccct 18972593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2853 times since January 2019
Visitors: 3829