View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0602_low_21 (Length: 344)
Name: NF0602_low_21
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 237 - 339
Target Start/End: Original strand, 35745526 - 35745628
Alignment:
| Q |
237 |
tataatatcaattaatagtgcctaggatatctcagatagataggtaatgctagacttccaacatcttctgcatgtcttgtctttcaatgttattcatctc |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35745526 |
tataatatcaattaatagtgcctaggatatctcagatagataggtaatgctaagcttccaacatcttctgcatgtcttgtctttcaatgttattcatgtc |
35745625 |
T |
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| Q |
337 |
act |
339 |
Q |
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||| |
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| T |
35745626 |
act |
35745628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 26296643 - 26296551
Alignment:
| Q |
115 |
tatctttttgaggcataattaaacgagatccgtgttgttagggtggacccaaatgctcccaaaatgacctctagtagcttccataattagaagaaag |
211 |
Q |
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|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26296643 |
tatctttttgaggcataa----acgagatctgtgttgttagggtggacccaaatgctcccaaaatgacctctagtagcttccataattagaagaaag |
26296551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 26296874 - 26296826
Alignment:
| Q |
76 |
aactggaccactagcaagagagccaatacaatgctcccatatctttttg |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26296874 |
aactggaccactagcaagagagccaatacaatgctcccatatctttttg |
26296826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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