View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0602_low_26 (Length: 323)
Name: NF0602_low_26
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 48 - 310
Target Start/End: Complemental strand, 492665 - 492404
Alignment:
| Q |
48 |
attccccccttcctattgtgtagcaccaccttcttccttttttcccctggctccttaatcctctccatttcatttacgggtcagctaaatggtttctttg |
147 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
492665 |
attccccccttcctgttgtgtagcgccaccttcttccttttttccc-tggctccttaatcctctccattccatttacgggtcagctaaatggtttcttgg |
492567 |
T |
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| Q |
148 |
ccaaagtccaattgtcagttgcctatcaacggagcttatctgatcatgttcctttgatgttaataattgaagaagctaattggggacctcggccgcttcg |
247 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
492566 |
ccaaagtccaattgtcagttgcctatcaacggggcttatctgatcatgttcctttgatgttaataactgaagaagctaattggggacctcggccgcttcg |
492467 |
T |
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| Q |
248 |
gatgcttaaatgttggtcggaatttctagggtacggtgattttgtccgagaaaaatggggttc |
310 |
Q |
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| T |
492466 |
gatgcttaaatgttggtcgaaatttctagggtatggtgattttgtccgagaaaaatggggttc |
492404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 492904 - 493017
Alignment:
| Q |
48 |
attccccccttcctattgtgtagcaccaccttcttccttttttcccctggctccttaatcctctccatttcatttacgggtcagctaaatggtttctttg |
147 |
Q |
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||||| |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| ||| |
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| T |
492904 |
attcctcccttcctgctgtgtagcgccaccttcttccttttttcct-tggctccttaatcctcttcatttcatttacggatcagctaaatggtttc-ttg |
493001 |
T |
|
| Q |
148 |
ccaaagtccaattgtc |
163 |
Q |
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|||||||||||||||| |
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| T |
493002 |
ccaaagtccaattgtc |
493017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 490669 - 490758
Alignment:
| Q |
73 |
ccaccttcttccttttttcccctggctccttaatcctctccatttcatttacgggtcagctaaatggtttctttgccaaagtccaattgtca |
164 |
Q |
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| T |
490669 |
ccaccttcttccttttttccc-tcgctccttaatcctcttcatttcatttacaggtcagttaaatggtttc-ttgccaaagtccaattgtca |
490758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 24218385 - 24218424
Alignment:
| Q |
224 |
taattggggacctcggccgcttcggatgcttaaatgttgg |
263 |
Q |
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| T |
24218385 |
taattggggacctcgtccgcttcggatgcttaaatgttgg |
24218424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 265
Target Start/End: Complemental strand, 18699814 - 18699771
Alignment:
| Q |
222 |
gctaattggggacctcggccgcttcggatgcttaaatgttggtc |
265 |
Q |
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| T |
18699814 |
gctaattggggccctcggccgcttcatatgcttaaatgttggtc |
18699771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 26244128 - 26244174
Alignment:
| Q |
222 |
gctaattggggacctcggccgcttcggatgcttaaatgttggtcgga |
268 |
Q |
| |
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| T |
26244128 |
gctaattggggacctcggcctttgaggatgcttaaatgttggtcgga |
26244174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 268
Target Start/End: Complemental strand, 45719716 - 45719670
Alignment:
| Q |
222 |
gctaattggggacctcggccgcttcggatgcttaaatgttggtcgga |
268 |
Q |
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| T |
45719716 |
gctaattggggacctcggcctttgaggatgcttaaatgttggtcgga |
45719670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 36080146 - 36080031
Alignment:
| Q |
48 |
attccccccttcctattgtgtagcaccaccttcttccttttttcccctggctccttaatcctctccatttcatttacgggtcagctaaatggtttctttg |
147 |
Q |
| |
|
|||||||||||||| |||||| || ||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||| ||||||| | |
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| T |
36080146 |
attccccccttcctgttgtgttgcgccagcttcttccttttttccc-tgactccttaatcctctccatttcatttacgggtcaactaaattgtttcttgg |
36080048 |
T |
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| Q |
148 |
ccaaagtccaattgtca |
164 |
Q |
| |
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||||||| ||||||||| |
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| T |
36080047 |
ccaaagttcaattgtca |
36080031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 14974272 - 14974318
Alignment:
| Q |
222 |
gctaattggggacctcggccgcttcggatgcttaaatgttggtcgga |
268 |
Q |
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|
|||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
14974272 |
gctaattggggacctcggcctttgaggatgcttaaatgttggtcgga |
14974318 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 80 - 164
Target Start/End: Complemental strand, 49433997 - 49433914
Alignment:
| Q |
80 |
cttccttttttcccctggctccttaatcctctccatttcatttacgggtcagctaaatggtttctttgccaaagtccaattgtca |
164 |
Q |
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||||||||||| || | |||||||||||||||||||||||||| |||||||||| || ||||||| |||||||||||||||||| |
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| T |
49433997 |
cttcctttttttcc-tagctccttaatcctctccatttcatttttgggtcagctagatagtttcttggccaaagtccaattgtca |
49433914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 270
Target Start/End: Original strand, 16174391 - 16174442
Alignment:
| Q |
219 |
gaagctaattggggacctcggccgcttcggatgcttaaatgttggtcggaat |
270 |
Q |
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| T |
16174391 |
gaagctaattggggacctctgcctttgcggatgcttaaatgttggtctgaat |
16174442 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 13061383 - 13061423
Alignment:
| Q |
223 |
ctaattggggacctcggccgcttcggatgcttaaatgttgg |
263 |
Q |
| |
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|||||||||||||||| ||||| | |||||||||||||||| |
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| T |
13061383 |
ctaattggggacctcgtccgctccagatgcttaaatgttgg |
13061423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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