View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0602_low_27 (Length: 318)
Name: NF0602_low_27
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 10 - 289
Target Start/End: Complemental strand, 24910379 - 24910100
Alignment:
| Q |
10 |
gcatagggacgtatcagatgtgtatcgatatcagatacatgttacacaatgatgcttttctgtttttcaagtatcaacgcttcataggttgcatgtttta |
109 |
Q |
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| T |
24910379 |
gcatagggacgtatcagatgtgtatcgatatcagatacatgttacacaatgatgcttttctgtttttcaagtatcagcgcttcataggttgcatgtttta |
24910280 |
T |
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| Q |
110 |
tttggggaattgggaccgggtaagggttgcaacttaatcttggttttggagcttaggaaatttaatgtagtactatgttgcaggtagtgttaagttgaaa |
209 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24910279 |
tttggggaattgggacggggtaagggttgcaacttaatcttggttttggagcttaggaaatttaatgtagtactatgttgcaggtagtgttaagttgaaa |
24910180 |
T |
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| Q |
210 |
gaaactaagctttaggaatatgttatggcttcatttagtagtacaattataggtatagttgttctctttttgattctttc |
289 |
Q |
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| T |
24910179 |
gaaactaagctttaggaagatgttatggcttcatttagtagtacaattataggtatagttgttctctttttgattctttc |
24910100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 131 - 289
Target Start/End: Complemental strand, 24895926 - 24895768
Alignment:
| Q |
131 |
aagggttgcaacttaatcttggttttggagcttaggaaatttaatgtagtactatgttgcaggtagtgttaagttgaaagaaactaagctttaggaatat |
230 |
Q |
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||||||| || |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24895926 |
aagggttacagcttagtcttgattttggagcttaggaaatttaatgtagtactatgttgcaggtagtgttaagttgaaagaaactaagctttaggaagat |
24895827 |
T |
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| Q |
231 |
gttatggcttcatttagtagtacaattataggtatagttgttctctttttgattctttc |
289 |
Q |
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| T |
24895826 |
gttatggcttcatttagtagtacaattataggtatagttgtcctctttttgattctttc |
24895768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 24896002 - 24895952
Alignment:
| Q |
72 |
tttttcaagtatcaacgcttcataggttgcatgttttatttggggaattgg |
122 |
Q |
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||||| ||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
24896002 |
ttttttaagtatctgcgcttcataggttgaatgttttatttggggaattgg |
24895952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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