View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0602_low_3 (Length: 527)

Name: NF0602_low_3
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0602_low_3
NF0602_low_3
[»] chr4 (5 HSPs)
chr4 (14-199)||(54153374-54153558)
chr4 (210-249)||(54153318-54153357)
chr4 (43-93)||(2724031-2724081)
chr4 (46-97)||(44564173-44564224)
chr4 (43-100)||(8306340-8306397)
[»] chr6 (1 HSPs)
chr6 (257-326)||(29279776-29279845)
[»] chr2 (3 HSPs)
chr2 (257-325)||(28296897-28296965)
chr2 (264-326)||(22142287-22142349)
chr2 (43-93)||(29978365-29978415)
[»] chr8 (4 HSPs)
chr8 (43-93)||(2954096-2954146)
chr8 (257-308)||(14836399-14836450)
chr8 (257-288)||(27229237-27229268)
chr8 (52-93)||(39529660-39529701)
[»] chr3 (3 HSPs)
chr3 (256-308)||(5578166-5578218)
chr3 (257-309)||(51646885-51646937)
chr3 (257-309)||(32077494-32077546)
[»] scaffold0596 (1 HSPs)
scaffold0596 (261-311)||(1692-1742)
[»] chr5 (2 HSPs)
chr5 (43-87)||(13633883-13633927)
chr5 (43-93)||(13298033-13298082)
[»] chr1 (5 HSPs)
chr1 (43-94)||(48103922-48103973)
chr1 (43-84)||(1484190-1484231)
chr1 (257-326)||(29308696-29308765)
chr1 (43-83)||(32140395-32140435)
chr1 (43-79)||(38028709-38028745)
[»] chr7 (4 HSPs)
chr7 (43-93)||(41217008-41217058)
chr7 (45-87)||(41383507-41383549)
chr7 (43-93)||(41714272-41714322)
chr7 (43-93)||(44533577-44533627)
[»] scaffold0024 (1 HSPs)
scaffold0024 (48-93)||(88518-88563)
[»] scaffold0015 (1 HSPs)
scaffold0015 (43-100)||(43244-43301)


Alignment Details
Target: chr4 (Bit Score: 170; Significance: 5e-91; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 54153558 - 54153374
Alignment:
Q  14 atatacatgaacattaaaagtagatattgaataaaatcatatatttgaatcttgaaaatttatatgtaaattgataaaaaagatgaattgggggcataaa 113  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  54153558 atatacatgaacattaaaagtagatattgaataaaaccatatatttgaatcttgaaaatttatatgtaaattgataaaaaagatgaattgggg-cataaa 54153460  T
Q  114 ccaatagaccacttgagagcacatatattgttttgttatattaaaatttaaaaagcatacaattaaatatattttttaattgtaac 199  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54153459 ccaatagaccacttgggagcacatatattgttttgttatattaaaatttaaaaagcatacaattaaatatattttttaattgtaac 54153374  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 54153357 - 54153318
Alignment:
Q  210 ttaattaatatgaaataaggtatgtttgcataggtataat 249  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  54153357 ttaattaatatgaaataaggtatgtttgcgtaggtataat 54153318  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 2724081 - 2724031
Alignment:
Q  43 aataaaatcatatatttgaatcttgaaaatttatatgtaaattgataaaaa 93  Q
    |||||||||||||||| |||| ||||||||| |||||||||||||| ||||    
T  2724081 aataaaatcatatattagaattttgaaaattcatatgtaaattgattaaaa 2724031  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 44564224 - 44564173
Alignment:
Q  46 aaaatcatatatttgaatcttgaaaatttatatgtaaattgataaaaaagat 97  Q
    ||||||||| |||||||||||||||||| ||||  |||||||| ||||||||    
T  44564224 aaaatcataaatttgaatcttgaaaattcatatacaaattgatcaaaaagat 44564173  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 8306397 - 8306340
Alignment:
Q  43 aataaaatcatatatttgaatcttgaaaatttatatgtaaattgataaaaaagatgaa 100  Q
    ||||||| |||||||||||||||| |||||| ||| | |||||||| |||| ||||||    
T  8306397 aataaaaccatatatttgaatctttaaaattcataaggaaattgatcaaaaggatgaa 8306340  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 257 - 326
Target Start/End: Original strand, 29279776 - 29279845
Alignment:
Q  257 atacttatttctaatatgaatagcattgttaactttttgtgccaactctaatccttcctactttggcgcc 326  Q
    |||||||||||||||||||||||||||||||||   |||||||||| |||||||| | || |||||||||    
T  29279776 atacttatttctaatatgaatagcattgttaacaaattgtgccaaccctaatcctacttaatttggcgcc 29279845  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 257 - 325
Target Start/End: Complemental strand, 28296965 - 28296897
Alignment:
Q  257 atacttatttctaatatgaatagcattgttaactttttgtgccaactctaatccttcctactttggcgc 325  Q
    |||||||||||||||||||||||||||||||||   |||||||||| |||||||| | || ||||||||    
T  28296965 atacttatttctaatatgaatagcattgttaacaaattgtgccaaccctaatcctacttattttggcgc 28296897  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 326
Target Start/End: Complemental strand, 22142349 - 22142287
Alignment:
Q  264 tttctaatatgaatagcattgttaactttttgtgccaactctaatccttcctactttggcgcc 326  Q
    ||||||||||||||||||||||||||   |||||||||| |||||| | | || |||||||||    
T  22142349 tttctaatatgaatagcattgttaacaaattgtgccaaccctaatcttacttattttggcgcc 22142287  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 29978415 - 29978365
Alignment:
Q  43 aataaaatcatatatttgaatcttgaaaatttatatgtaaattgataaaaa 93  Q
    ||||||| ||||||||||||||||||||||  ||||||| |||||| ||||    
T  29978415 aataaaaccatatatttgaatcttgaaaatcaatatgtagattgattaaaa 29978365  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 2954146 - 2954096
Alignment:
Q  43 aataaaatcatatatttgaatcttgaaaatttatatgtaaattgataaaaa 93  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| ||||    
T  2954146 aataaaaccataaatttgaatcttgaaaatttatatgtaaattgattaaaa 2954096  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 308
Target Start/End: Original strand, 14836399 - 14836450
Alignment:
Q  257 atacttatttctaatatgaatagcattgttaactttttgtgccaactctaat 308  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||| |||||    
T  14836399 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 14836450  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 288
Target Start/End: Original strand, 27229237 - 27229268
Alignment:
Q  257 atacttatttctaatatgaatagcattgttaa 288  Q
    ||||||||||||||||||||||||||||||||    
T  27229237 atacttatttctaatatgaatagcattgttaa 27229268  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 39529660 - 39529701
Alignment:
Q  52 atatatttgaatcttgaaaatttatatgtaaattgataaaaa 93  Q
    ||||||||||||||| |||||||||||| |||||||| ||||    
T  39529660 atatatttgaatcttaaaaatttatatgcaaattgatcaaaa 39529701  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 308
Target Start/End: Complemental strand, 5578218 - 5578166
Alignment:
Q  256 tatacttatttctaatatgaatagcattgttaactttttgtgccaactctaat 308  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||||| |||||    
T  5578218 tatacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 5578166  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 309
Target Start/End: Original strand, 51646885 - 51646937
Alignment:
Q  257 atacttatttctaatatgaatagcattgttaactttttgtgccaactctaatc 309  Q
    |||||||||||||||||||||| ||||||||||  |||||| |||| ||||||    
T  51646885 atacttatttctaatatgaataacattgttaacaatttgtgtcaaccctaatc 51646937  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 32077546 - 32077494
Alignment:
Q  257 atacttatttctaatatgaatagcattgttaactttttgtgccaactctaatc 309  Q
    |||||||||||||||||||||| ||||| ||||  ||| ||||||| ||||||    
T  32077546 atacttatttctaatatgaataacattgctaacaatttatgccaaccctaatc 32077494  T

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Target: scaffold0596 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 1742 - 1692
Alignment:
Q  261 ttatttctaatatgaatagcattgttaactttttgtgccaactctaatcct 311  Q
    |||||||||||||||||| || ||||||| |||||||||||| ||||||||    
T  1742 ttatttctaatatgaataacaatgttaacattttgtgccaaccctaatcct 1692  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 13633883 - 13633927
Alignment:
Q  43 aataaaatcatatatttgaatcttgaaaatttatatgtaaattga 87  Q
    |||||||||| |||||||||||||||||||| ||||| |||||||    
T  13633883 aataaaatcacatatttgaatcttgaaaattcatatgcaaattga 13633927  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 13298082 - 13298033
Alignment:
Q  43 aataaaatcatatatttgaatcttgaaaatttatatgtaaattgataaaaa 93  Q
    |||||||||| | |||||||||||||||||| |||||||||||||| ||||    
T  13298082 aataaaatcaaa-atttgaatcttgaaaattcatatgtaaattgatcaaaa 13298033  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 48103973 - 48103922
Alignment:
Q  43 aataaaatcatatatttgaatcttgaaaatttatatgtaaattgataaaaaa 94  Q
    |||||| ||||| ||||||||||| |||||| ||||||||||||| ||||||    
T  48103973 aataaactcatagatttgaatcttcaaaattcatatgtaaattgacaaaaaa 48103922  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 1484231 - 1484190
Alignment:
Q  43 aataaaatcatatatttgaatcttgaaaatttatatgtaaat 84  Q
    ||||||||||| |||||||| |||||||||||||||| ||||    
T  1484231 aataaaatcatgtatttgaaacttgaaaatttatatgcaaat 1484190  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 326
Target Start/End: Original strand, 29308696 - 29308765
Alignment:
Q  257 atacttatttctaatatgaatagcattgttaactttttgtgccaactctaatccttcctactttggcgcc 326  Q
    |||||||||||||||||||||| ||||||||||   ||||| ||||  ||||||| | || |||||||||    
T  29308696 atacttatttctaatatgaataacattgttaacaaattgtgtcaaccttaatcctacttattttggcgcc 29308765  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 32140395 - 32140435
Alignment:
Q  43 aataaaatcatatatttgaatcttgaaaatttatatgtaaa 83  Q
    ||||||||||||||||| |||||||||||| ||| ||||||    
T  32140395 aataaaatcatatatttaaatcttgaaaatgtatgtgtaaa 32140435  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 38028709 - 38028745
Alignment:
Q  43 aataaaatcatatatttgaatcttgaaaatttatatg 79  Q
    ||||||||| || ||||||||||||||||||||||||    
T  38028709 aataaaatcgtagatttgaatcttgaaaatttatatg 38028745  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 41217008 - 41217058
Alignment:
Q  43 aataaaatcatatatttgaatcttgaaaatttatatgtaaattgataaaaa 93  Q
    ||||||||||||||||||| ||||||| ||||||||  |||||||| ||||    
T  41217008 aataaaatcatatatttgattcttgaagatttatatacaaattgattaaaa 41217058  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 41383549 - 41383507
Alignment:
Q  45 taaaatcatatatttgaatcttgaaaatttatatgtaaattga 87  Q
    ||||||||||||||||||| || |||||| |||||||||||||    
T  41383549 taaaatcatatatttgaatattaaaaattcatatgtaaattga 41383507  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 41714322 - 41714272
Alignment:
Q  43 aataaaatcatatatttgaatcttgaaaatttatatgtaaattgataaaaa 93  Q
    ||||||||||||  | ||||||||||||||| |||||||||||||| ||||    
T  41714322 aataaaatcataggtatgaatcttgaaaattcatatgtaaattgattaaaa 41714272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 44533627 - 44533577
Alignment:
Q  43 aataaaatcatatatttgaatcttgaaaatttatatgtaaattgataaaaa 93  Q
    ||||||| |||| |||||||||||||||||  ||||| |||||||||||||    
T  44533627 aataaaaccatagatttgaatcttgaaaatccatatgcaaattgataaaaa 44533577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 88563 - 88518
Alignment:
Q  48 aatcatatatttgaatcttgaaaatttatatgtaaattgataaaaa 93  Q
    ||||||||||||||  |||||||||| |||||||||| ||||||||    
T  88563 aatcatatatttgatgcttgaaaattcatatgtaaatagataaaaa 88518  T

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Target: scaffold0015 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 43244 - 43301
Alignment:
Q  43 aataaaatcatatatttgaatcttgaaaatttatatgtaaattgataaaaaagatgaa 100  Q
    |||||||||||  |||||||||||||||||| ||||  | |||||| |||||||||||    
T  43244 aataaaatcattgatttgaatcttgaaaattcatatacagattgattaaaaagatgaa 43301  T

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