View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0602_low_31 (Length: 292)
Name: NF0602_low_31
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602_low_31 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 23 - 263
Target Start/End: Original strand, 28551595 - 28551835
Alignment:
| Q |
23 |
cacaagaataagttaaaaatgttacctttcagcaatcgatattaagtgcacatctcttaaatagacacaataattaaatattacgcaacttatgttttca |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28551595 |
cacaagaataagttaaaaatgttacctttcagcaatcgatattaagtgcacatctcttaaatagacacaataattaaatattacgcaacttatgttttca |
28551694 |
T |
|
| Q |
123 |
ccactcaaacttgtagcatactttaagaattgagtcattgtattgcttgactgttcatcgatccaagcatgtggactcaaaggtacactcagacttctta |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28551695 |
ccactcaaacttgtagcatactttaagaattgagtcattgtattgcttgactgttcatcgatccaagcatgtggactcaaaggtacactcagacttctta |
28551794 |
T |
|
| Q |
223 |
agctcaaactacttagatcaagttttctccaaagttcagga |
263 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28551795 |
agctcaaactccttagatcaagttttctccaaagttcagga |
28551835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 23 - 263
Target Start/End: Complemental strand, 27813350 - 27813110
Alignment:
| Q |
23 |
cacaagaataagttaaaaatgttacctttcagcaatcgatattaagtgcacatctcttaaatagacacaataattaaatattacgcaacttatgttttca |
122 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||| || |||||||| || |||||| || |||| ||||||| |||||||| ||| | |
|
|
| T |
27813350 |
cacaagaataagttaacaatgttacctttcagcaatcgagattaaatgtacatctctcaagtagacataacaattgaatattatacaacttatatttccg |
27813251 |
T |
|
| Q |
123 |
ccactcaaacttgtagcatactttaagaattgagtcattgtattgcttgactgttcatcgatccaagcatgtggactcaaaggtacactcagacttctta |
222 |
Q |
| |
|
||||||||||||| ||||||||| || |||||||||||| | | |||||| || ||||| ||||||||| ||| ||||| |||||| ||| || |||| |
|
|
| T |
27813250 |
ccactcaaacttgaagcatacttcaaaaattgagtcattttttggcttgaatgatcatccctccaagcatatggtctcaatggtacattcaaacctcttg |
27813151 |
T |
|
| Q |
223 |
agctcaaactacttagatcaagttttctccaaagttcagga |
263 |
Q |
| |
|
|| |||| |||||| ||||||||| |||||||||| |||| |
|
|
| T |
27813150 |
agttcaatgtacttatatcaagtttgctccaaagttgagga |
27813110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 209
Target Start/End: Complemental strand, 27805899 - 27805713
Alignment:
| Q |
23 |
cacaagaataagttaaaaatgttacctttcagcaatcgatattaagtgcacatctcttaaatagacacaataattaaatattacgcaacttatgttttca |
122 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||| || ||||| || || |||||| || |||| ||||||||||||||||| ||| | |
|
|
| T |
27805899 |
cacaagaataagttaataatgttacctttcagcaatcgaggttaaatgtacatcactcaagtagacataacaattgaatattacgcaacttatatttccg |
27805800 |
T |
|
| Q |
123 |
ccactcaaacttgtagcatactttaagaattgagtcattgtattgcttgactgttcatcgatccaagcatgtggactcaaaggtaca |
209 |
Q |
| |
|
||||||||||||| ||||||||| |||||||| |||||| | | |||||| |||||||| ||||||||| ||| ||||| |||||| |
|
|
| T |
27805799 |
ccactcaaacttgaagcatacttcaagaattgcgtcattttttggcttgagtgttcatccctccaagcatatggtctcaatggtaca |
27805713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2898 times since January 2019
Visitors: 3831