View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0602_low_32 (Length: 292)

Name: NF0602_low_32
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0602_low_32
NF0602_low_32
[»] chr1 (2 HSPs)
chr1 (64-206)||(35764977-35765119)
chr1 (198-240)||(35764756-35764798)
[»] chr4 (2 HSPs)
chr4 (64-163)||(9565039-9565138)
chr4 (65-164)||(18875174-18875273)
[»] chr6 (2 HSPs)
chr6 (64-166)||(19567802-19567904)
chr6 (64-163)||(19565166-19565265)
[»] scaffold0196 (1 HSPs)
scaffold0196 (64-134)||(22911-22981)
[»] scaffold0009 (1 HSPs)
scaffold0009 (69-163)||(221911-222005)
[»] chr5 (1 HSPs)
chr5 (64-163)||(889878-889977)
[»] chr8 (1 HSPs)
chr8 (79-163)||(17289697-17289781)


Alignment Details
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 64 - 206
Target Start/End: Complemental strand, 35765119 - 35764977
Alignment:
Q  64 catcatcaaacattctggacatcagatgtatgttactgattttatccacatcatcgtaaaatacaacatcgccacatagaccagaccatgaatgcatgaa 163  Q
    |||||||||| |||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||  | ||||||  | |||||||||||||||    
T  35765119 catcatcaaatattaaggacatcagatgtatgttactgattttatccacaccatcgtaaaatacaacatcgttagatagactgggccatgaatgcatgaa 35765020  T
Q  164 tactaaaaaaccacgtcaacatatatcatcaaatattcatcat 206  Q
    |||||||| ||||| ||||||||||||||||||||||||||||    
T  35765019 tactaaaagaccacatcaacatatatcatcaaatattcatcat 35764977  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 35764798 - 35764756
Alignment:
Q  198 attcatcatctaatttctattatcgaaattgctaagtttctct 240  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  35764798 attcatcatctaatttctattatcgaaattgctaagtttctct 35764756  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 9565138 - 9565039
Alignment:
Q  64 catcatcaaacattctggacatcagatgtatgttactgattttatccacatcatcgtaaaatacaacatcgccacatagaccagaccatgaatgcatgaa 163  Q
    |||| ||||| ||| ||||||||||| |||||||||||||||| |||||| |||||| |||||||||||||  | ||||  | |||||||||||||||||    
T  9565138 catcgtcaaatattttggacatcagaggtatgttactgattttgtccacaccatcgtcaaatacaacatcgttaaataggactgaccatgaatgcatgaa 9565039  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 164
Target Start/End: Original strand, 18875174 - 18875273
Alignment:
Q  65 atcatcaaacattctggacatcagatgtatgttactgattttatccacatcatcgtaaaatacaacatcgccacatagaccagaccatgaatgcatgaat 164  Q
    ||||| ||| ||| ||||||||||| |||||||||||||||  |||||| |||||| |||||||||||||  | ||||||  ||| ||||||||||||||    
T  18875174 atcattaaatattttggacatcagaggtatgttactgatttcgtccacaccatcgtcaaatacaacatcgttaaatagacttgactatgaatgcatgaat 18875273  T

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Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 64 - 166
Target Start/End: Complemental strand, 19567904 - 19567802
Alignment:
Q  64 catcatcaaacattctggacatcagatgtatgttactgattttatccacatcatcgtaaaatacaacatcgccacatagaccagaccatgaatgcatgaa 163  Q
    ||||| |||| ||| ||||||||||| |||||||||||||||| |||||| |||||| |||||||||||||  | ||||  | |||| ||||||||||||    
T  19567904 catcaacaaatattttggacatcagaggtatgttactgattttgtccacaccatcgtcaaatacaacatcgttaaataggactgaccttgaatgcatgaa 19567805  T
Q  164 tac 166  Q
    |||    
T  19567804 tac 19567802  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 19565265 - 19565166
Alignment:
Q  64 catcatcaaacattctggacatcagatgtatgttactgattttatccacatcatcgtaaaatacaacatcgccacatagaccagaccatgaatgcatgaa 163  Q
    |||| ||||| ||| ||||||||| | |||||||||||||||| ||||||||||||| |||||||||||||  | ||||  | || ||||||||||||||    
T  19565265 catcgtcaaatattttggacatcaaaggtatgttactgattttgtccacatcatcgtgaaatacaacatcgttaaataggactgagcatgaatgcatgaa 19565166  T

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Target: scaffold0196 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 134
Target Start/End: Original strand, 22911 - 22981
Alignment:
Q  64 catcatcaaacattctggacatcagatgtatgttactgattttatccacatcatcgtaaaatacaacatcg 134  Q
    |||| ||||| ||| ||||||||||| |||||||||||||||| |||||| |||||| |||||||||||||    
T  22911 catcgtcaaatattttggacatcagaggtatgttactgattttgtccacaccatcgtcaaatacaacatcg 22981  T

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Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 163
Target Start/End: Original strand, 221911 - 222005
Alignment:
Q  69 tcaaacattctggacatcagatgtatgttactgattttatccacatcatcgtaaaatacaacatcgccacatagaccagaccatgaatgcatgaa 163  Q
    ||||| ||| ||||||||||| |||||||||||||||| |||||| |||||| ||||||||||||   | ||||  | |||||||||||||||||    
T  221911 tcaaatattttggacatcagaggtatgttactgattttgtccacaccatcgtcaaatacaacatcctgaaataggactgaccatgaatgcatgaa 222005  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 889977 - 889878
Alignment:
Q  64 catcatcaaacattctggacatcagatgtatgttactgattttatccacatcatcgtaaaatacaacatcgccacatagaccagaccatgaatgcatgaa 163  Q
    |||| ||||| ||| |||||||||||  |||||||||||| ||  ||||| |||||| ||||||||||||| || ||||  | |||||||||||||||||    
T  889977 catcgtcaaatattttggacatcagagatatgttactgatcttgcccacaccatcgtcaaatacaacatcgtcaaataggactgaccatgaatgcatgaa 889878  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 17289697 - 17289781
Alignment:
Q  79 tggacatcagatgtatgttactgattttatccacatcatcgtaaaatacaacatcgccacatagaccagaccatgaatgcatgaa 163  Q
    |||| |||||| |||||||||||||||| |||||| |||||| ||||||||||| | || |||   | |||||||||||||||||    
T  17289697 tggatatcagaggtatgttactgattttgtccacaccatcgtcaaatacaacattgtcaaatatgactgaccatgaatgcatgaa 17289781  T

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