View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0602_low_33 (Length: 288)

Name: NF0602_low_33
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0602_low_33
NF0602_low_33
[»] chr8 (10 HSPs)
chr8 (53-212)||(12068252-12068411)
chr8 (59-146)||(15608320-15608407)
chr8 (59-146)||(15995542-15995629)
chr8 (54-146)||(15616829-15616921)
chr8 (54-146)||(15628352-15628444)
chr8 (54-146)||(15640021-15640113)
chr8 (54-146)||(15652127-15652219)
chr8 (53-146)||(15972014-15972107)
chr8 (79-146)||(15626434-15626501)
chr8 (79-146)||(15650191-15650258)


Alignment Details
Target: chr8 (Bit Score: 104; Significance: 7e-52; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 53 - 212
Target Start/End: Complemental strand, 12068411 - 12068252
Alignment:
Q  53 cagagaagaggataacgggatcagacatgatttcaagtgcaatcgaacatttgaagtgttcaagaagctgttcagccgtcattgctgtctttttcgatnn 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||| |||      
T  12068411 cagagaagaggataacgggatcagacatgatttcaagtgcaatcggacatttgaagtgttcaagaagctgttcaaccgccattgctgtctttttggataa 12068312  T
Q  153 nnnnnnnnnntctaaacctaggaaacgtaaataaaaaatcttctttagaatttctgttta 212  Q
              |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12068311 aaaaaaaaaatctaaacctaggaaacgtaactaaaaaatcttctttagaatttctgttta 12068252  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 59 - 146
Target Start/End: Original strand, 15608320 - 15608407
Alignment:
Q  59 agaggataacgggatcagacatgatttcaagtgcaatcgaacatttgaagtgttcaagaagctgttcagccgtcattgctgtcttttt 146  Q
    |||||||||||| |||| ||||||||||||||| ||||  |||||||||||||||||||||||||||||||| |||||||||||||||    
T  15608320 agaggataacggaatcatacatgatttcaagtgaaatcagacatttgaagtgttcaagaagctgttcagccgccattgctgtcttttt 15608407  T

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Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 59 - 146
Target Start/End: Complemental strand, 15995629 - 15995542
Alignment:
Q  59 agaggataacgggatcagacatgatttcaagtgcaatcgaacatttgaagtgttcaagaagctgttcagccgtcattgctgtcttttt 146  Q
    ||||||||| |||||| |||||||||||||||| ||||  |||||||||||||||||||||||||||||||| |||||||||||||||    
T  15995629 agaggataatgggatcggacatgatttcaagtgaaatcagacatttgaagtgttcaagaagctgttcagccgccattgctgtcttttt 15995542  T

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Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 15616829 - 15616921
Alignment:
Q  54 agagaagaggataacgggatcagacatgatttcaagtgcaatcgaacatttgaagtgttcaagaagctgttcagccgtcattgctgtcttttt 146  Q
    |||| |||||||||||| |||| |||||||||||||||  |||  |||||||||||||||||||||||||||||||| |||||||||||||||    
T  15616829 agaggagaggataacggaatcatacatgatttcaagtgacatcagacatttgaagtgttcaagaagctgttcagccgccattgctgtcttttt 15616921  T

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Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 15628352 - 15628444
Alignment:
Q  54 agagaagaggataacgggatcagacatgatttcaagtgcaatcgaacatttgaagtgttcaagaagctgttcagccgtcattgctgtcttttt 146  Q
    |||| |||||||||||| |||| |||||||| |||||| ||||  |||||||||||||||||||||||||||||||| |||||||||||||||    
T  15628352 agaggagaggataacggaatcatacatgattacaagtgaaatcagacatttgaagtgttcaagaagctgttcagccgccattgctgtcttttt 15628444  T

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Target: chr8; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 15640021 - 15640113
Alignment:
Q  54 agagaagaggataacgggatcagacatgatttcaagtgcaatcgaacatttgaagtgttcaagaagctgttcagccgtcattgctgtcttttt 146  Q
    |||| |||||||||||| |||| |||||||||||||||  |||  |||||||||||||||||||||||||||||||| |||||||||||||||    
T  15640021 agaggagaggataacggaatcatacatgatttcaagtgacatcagacatttgaagtgttcaagaagctgttcagccgccattgctgtcttttt 15640113  T

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Target: chr8; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 15652127 - 15652219
Alignment:
Q  54 agagaagaggataacgggatcagacatgatttcaagtgcaatcgaacatttgaagtgttcaagaagctgttcagccgtcattgctgtcttttt 146  Q
    |||| |||||||||||| |||| ||||||||||||||| ||||  |||||||||||||||||||||||||||||||| ||||||| |||||||    
T  15652127 agaggagaggataacggaatcatacatgatttcaagtgaaatcagacatttgaagtgttcaagaagctgttcagccgccattgctttcttttt 15652219  T

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Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 146
Target Start/End: Complemental strand, 15972107 - 15972014
Alignment:
Q  53 cagagaagaggataacgggatcagacatgatttcaagtgcaatcgaacatttgaagtgttcaagaagctgttcagccgtcattgctgtcttttt 146  Q
    ||||| ||||||||||  |||| |||||||||||||||| ||| | ||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  15972107 cagaggagaggataacaagatcggacatgatttcaagtgaaattggacatttgaagtgttcaagaagctattcagccgtcatttctgtcttttt 15972014  T

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Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 15626434 - 15626501
Alignment:
Q  79 atgatttcaagtgcaatcgaacatttgaagtgttcaagaagctgttcagccgtcattgctgtcttttt 146  Q
    |||||||||||||  |||  |||||||||||||||||||||||||||||||| |||||||||||||||    
T  15626434 atgatttcaagtgacatcagacatttgaagtgttcaagaagctgttcagccgccattgctgtcttttt 15626501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 15650191 - 15650258
Alignment:
Q  79 atgatttcaagtgcaatcgaacatttgaagtgttcaagaagctgttcagccgtcattgctgtcttttt 146  Q
    |||||||||||||  |||  |||||||||||||||||||||||||||||||| |||||||||||||||    
T  15650191 atgatttcaagtgatatcagacatttgaagtgttcaagaagctgttcagccgccattgctgtcttttt 15650258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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