View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0602_low_34 (Length: 285)
Name: NF0602_low_34
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602_low_34 |
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| [»] scaffold0373 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 57 - 232
Target Start/End: Complemental strand, 6850688 - 6850507
Alignment:
| Q |
57 |
catcatcattgaaatatataaaattgtgagtttcttacttaggagttatagagtgagctcgc------tcactcaagttatgagta-tgtcgcaccatct |
149 |
Q |
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| T |
6850688 |
catcatcattgaaatatataaaattgtgagtttcttacttaggagttacagagtgagcgagtgagttatgagtca-gttattatcaatgtcgcaccatct |
6850590 |
T |
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| Q |
150 |
acattctatatcaaaccgaaaagaaactaattcatgtacgggttggagcttcaaaataagtggaccaactcaccccttgatct |
232 |
Q |
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| T |
6850589 |
acattctatatcaaaccgaaaagaaagtaatccatgtacgggttggagcttcaaaataggtggaccaactcaccccttgatct |
6850507 |
T |
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Target: scaffold0373 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 6340 - 6397
Alignment:
| Q |
57 |
catcatcattgaaatatataaaattgtgagtttcttacttaggagttatagagtgagc |
114 |
Q |
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| T |
6340 |
catcatcattgaaatatataaaattgtgagtttcttacttaggagttacagagtgagc |
6397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 91
Target Start/End: Original strand, 49625743 - 49625773
Alignment:
| Q |
61 |
atcattgaaatatataaaattgtgagtttct |
91 |
Q |
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| T |
49625743 |
atcattgaaatatataaaattgtgagtttct |
49625773 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 26243682 - 26243722
Alignment:
| Q |
64 |
attgaaatatataaaattgtgagtttcttacttaggagtta |
104 |
Q |
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| T |
26243682 |
attgaaatatataaaattgtgagtttctcatttaagagtta |
26243722 |
T |
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