View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0602_low_9 (Length: 486)
Name: NF0602_low_9
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 30 - 478
Target Start/End: Original strand, 8557281 - 8557729
Alignment:
| Q |
30 |
gctccaacaatcaagtaagccgttactttcaaattgttattctgtttttcaattcatatttccggttaagtatttatgtggagatcttctcaataacagt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8557281 |
gctccaacaatcaagtaagccgttactttcaaattgttattctgtttttcaattcatatttccggttaagtatttatgtggagatcttctcaataacagt |
8557380 |
T |
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| Q |
130 |
aagtgaatcatagcgttgctgatgatggtaggaaagactaggatcagtcttcctttttcttgattgattactttactaatttacaatgtagggatgggga |
229 |
Q |
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| T |
8557381 |
aagtgaatcatagcgttgctgatgatggtaggaaagactagaatcagtcttcctttttcttgattgattactttactaatttacaatgtagggatgggga |
8557480 |
T |
|
| Q |
230 |
agtagtagatgctgggactgagactgattctaacctttatcatgagctatattatcattttctgggtacggatcaatcacaagatattctgtgctggaga |
329 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8557481 |
agtagtagatgcagggactgagactgattctaacctttatcatgagctatattatcattttctgggtacggatcaatcacaagatattctgtgctggaga |
8557580 |
T |
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| Q |
330 |
gatcctcacaaccctaaatatatgtttggagcaagtgtcactgatgacggaaaggtactgttctttccttgcttttgtatggttgagaacatgtgactaa |
429 |
Q |
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| T |
8557581 |
gatcctcacaaccctaaatatatgtttggagcaagtgtcactgatgacggaaaggtactgttctttccttgcttttgtatggttgagaacatgtgactaa |
8557680 |
T |
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| Q |
430 |
tttcctcaaaaacttactgctttatttgattttgcagtatgttcatctc |
478 |
Q |
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| T |
8557681 |
tttcctaaaaaacttactgctttatttgattttgtagtatgttcttctc |
8557729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 205 - 404
Target Start/End: Original strand, 8552460 - 8552659
Alignment:
| Q |
205 |
ctaatttacaatgtagggatggggaagtagtagatgctgggactgagactgattctaacctttatcatgagctatattatcattttctgggtacggatca |
304 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||| || || || ||||||||||||||||||||||| |
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| T |
8552460 |
ctaatttacaatgtagggatggggaagtcgtagatgctgggactgagactactgttaacctttatcaagaactctactatcattttctgggtacggatca |
8552559 |
T |
|
| Q |
305 |
atcacaagatattctgtgctggagagatcctcacaaccctaaatatatgtttggagcaagtgtcactgatgacggaaaggtactgttctttccttgcttt |
404 |
Q |
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| T |
8552560 |
gtcggaagatattctgtgttggagagatcttaagaactctaaatatatgtttgactcaagtgtcactggtgatggaaaggtaccattttttccgtgcttt |
8552659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 216 - 385
Target Start/End: Original strand, 53736878 - 53737047
Alignment:
| Q |
216 |
tgtagggatggggaagtagtagatgctgggactgagactgattctaacctttatcatgagctatattatcattttctgggtacggatcaatcacaagata |
315 |
Q |
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||||| ||||| ||||| ||||||||||||||||| || | ||||||||||||||| ||| |||||||||||| |||| |||||||||||| ||||| |
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| T |
53736878 |
tgtagagatggagaagtggtagatgctgggactgaaacgaactctaacctttatcatatgctttattatcattttttgggcacggatcaatcaggagata |
53736977 |
T |
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| Q |
316 |
ttctgtgctggagagatcctcacaaccctaaatatatgtttggagcaagtgtcactgatgacggaaaggt |
385 |
Q |
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|| ||||||||| ||||| | | |||||||||||| |||||||| || ||| |||||||| || ||||| |
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| T |
53736978 |
ttttgtgctggaaagatcatgaaaaccctaaatattcgtttggaggaattgttactgatgatgggaaggt |
53737047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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