View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0603_high_18 (Length: 264)
Name: NF0603_high_18
Description: NF0603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0603_high_18 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 16 - 264
Target Start/End: Complemental strand, 33168884 - 33168636
Alignment:
| Q |
16 |
atcaacaaaaaagccataaagcaacagcacggtcgtgcacccctttctttagatcgtgcgtaggagaaccgtgccaacacgcacgactgtgtgcctcata |
115 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33168884 |
atcaacgaaaaagccataaagcaacagcacggtcgtgcacccctttctttagatcgtgcgtaggagaaccgtgccaacacgcacgactgtgtgcctcaca |
33168785 |
T |
|
| Q |
116 |
agcacgctcgtgcgcccttccagccaacataatttcaacagttttttaaggcaaacacaatcgtgtgtcctatgcagttagaaatagttgttacaaactc |
215 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33168784 |
agcacgctcgtgcgcccttccagccagcataatttcaacagtttttcaaggcaaacacaatcatgtgtcctatgcagttagaaatagttgttacaaactc |
33168685 |
T |
|
| Q |
216 |
ttagaattctttagttattgactagtaactcatttttaatgtattctct |
264 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33168684 |
atagaattctttaattattgactagtaactcatttttaatgtattctct |
33168636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 12788407 - 12788457
Alignment:
| Q |
181 |
tgtcctatgcagttagaaatagttgttacaaactcttagaattctttagtt |
231 |
Q |
| |
|
||||||||||||| | |||||| |||||||||||||||||||||| ||||| |
|
|
| T |
12788407 |
tgtcctatgcagtcataaatagctgttacaaactcttagaattctctagtt |
12788457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 14601490 - 14601438
Alignment:
| Q |
204 |
tgttacaaactcttagaattctttagttattgactagtaactcatttttaatg |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||| |||| |||| |
|
|
| T |
14601490 |
tgttacaaactcttagaattctttagttattagcttgtaactcgttttcaatg |
14601438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 11271189 - 11271238
Alignment:
| Q |
197 |
aaatagttgttacaaactcttagaattctttagttattgactagtaactc |
246 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
11271189 |
aaataattgttataaactcttagaattctttagttattgatttgtaactc |
11271238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 6017874 - 6017939
Alignment:
| Q |
188 |
tgcagttagaaatagttgttacaaactcttagaatt----ctttagttattgactagtaactcatt |
249 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
6017874 |
tgcagtcagaaatatctgttacaaactcttagaattaattctttagttattgacttgtaactcatt |
6017939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 4850318 - 4850381
Alignment:
| Q |
197 |
aaatagttgttacaaactcttagaattctttagttattgactagtaactcatttttaatgtatt |
260 |
Q |
| |
|
||||||||||||||| || |||||||||||||||| || || ||||||| |||||||| |||| |
|
|
| T |
4850318 |
aaatagttgttacaaccttttagaattctttagtttatggcttgtaactcgtttttaatatatt |
4850381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 6013674 - 6013735
Alignment:
| Q |
188 |
tgcagttagaaatagttgttacaaactcttag----aattctttagttattgactagtaact |
245 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
6013674 |
tgcagtcagaaatagcggttacaaactcttagaattaattctttagttattgacttgtaact |
6013735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 357163 - 357130
Alignment:
| Q |
195 |
agaaatagttgttacaaactcttagaattcttta |
228 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
357163 |
agaaatagttgttgcaaactcttagaattcttta |
357130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1247 times since January 2019
Visitors: 3844