View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0603_high_2 (Length: 520)
Name: NF0603_high_2
Description: NF0603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0603_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 30 - 509
Target Start/End: Complemental strand, 53479182 - 53478703
Alignment:
| Q |
30 |
atttctcagtctcctttacctttaatttctcacacactttttcttttagtcatacatacaacagcaacaaatatagaaagccacctaattgaatctgaag |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
53479182 |
atttctcagtctcctttacctttaatttctcacacactttttcttttagtcatacatacaacagcaacaaatatagaaagccacctaattgaatgtgaag |
53479083 |
T |
|
| Q |
130 |
ggaatttcaatcgcttatctagattaggatatgtatgtaaccacctaatctaacactgtagcacattcaagacacacacgattataattggtgtgtatag |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53479082 |
ggaatttcaatcgcttatctagattaggatatgtatgtaaccacctaatctaacactgtagcacattcaagacacacacgattataattggtgtgtatag |
53478983 |
T |
|
| Q |
230 |
aaggaacttgattctttaaatcagcttcatatacatagaagcatgcagccagggacttttaatttgtcacgatccatgcacagttgtgacacactttgga |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53478982 |
aaggaacttgattctttaaatcagcttcatatacatagaagcatgcagccagggacttttaatttgtcacgatccatgcacagttgtgacacactttgga |
53478883 |
T |
|
| Q |
330 |
tgcacttcatagccacattgaagacattgataggcccaattagacccttgttcatcacagacacaacaaatgaagggccctcccccatttccatcagaca |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53478882 |
tgcacttcatagccacattgaagacattgataggcccaattagacccttgttcatcacagacacaacaaatgaagggccctcccccatttccatcagaca |
53478783 |
T |
|
| Q |
430 |
ctaaattaagtccatgatggtgcccttcatgatgcaccaaatttggaagatccttagcctcttcttcaagttgtttctct |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53478782 |
ctaaattaagtccatgatggtgcccttcatgatgcaccaaatttggaagatccttagcctcttcttcaagttgtttctct |
53478703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 556 times since January 2019
Visitors: 3835