View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0603_high_21 (Length: 262)
Name: NF0603_high_21
Description: NF0603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0603_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 33151950 - 33151753
Alignment:
| Q |
1 |
ccatcaatggtaggacttggttgatcatctgtaaaagatgtaattgcataattagctaggacatatttaaaaatatcaaaatcaagaaaagatcatgttg |
100 |
Q |
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| T |
33151950 |
ccatcaatggtaggacttggttgatcatctgtaaaagatgtaattgcataattagctaggacatatttaaaaatatcaaaatcaagaaaagatcatgttg |
33151851 |
T |
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| Q |
101 |
a----aaattgtctcattaaactagattaagaacatttacctgattttataaatgtttcatattctgcatcgaagttattctgcattgacttcaaact |
194 |
Q |
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| T |
33151850 |
aaattaaattgtctcattaaactagattaagaacatttacctgattttattaatgtttcatattctgcatcgaagttattctgcattgacttcaaact |
33151753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 2362489 - 2362346
Alignment:
| Q |
1 |
ccatcaatggtaggacttggttgatcatctgtaaaagatgtaattgcataattagctaggacatatttaaaaatatcaaaatcaagaaaagatcatgttg |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| | ||||||||||||||| ||||| | |||||||| |||| |
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| T |
2362489 |
ccatcaatggtaggacttggttgatcatctgtgaaagatgaaattgcataattagctgtcatatatttaaaaatatc-aaatc-attaaagatcaagttg |
2362392 |
T |
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| Q |
101 |
a----aaattgtctcattaaactagattaagaacatttacctgatt |
142 |
Q |
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| T |
2362391 |
aaattaaaatgtctcattaaactagatgaagagcttttacctgatt |
2362346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 39604150 - 39604094
Alignment:
| Q |
1 |
ccatcaatggtaggacttggttgatcatctgtaaaagatgtaattgcataattagct |
57 |
Q |
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||||||||||||||| ||| |||||||||||| || |||||| |||||| |||||| |
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| T |
39604150 |
ccatcaatggtaggagttgattgatcatctgtgtaacatgtaactgcatatttagct |
39604094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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