View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0603_high_23 (Length: 253)
Name: NF0603_high_23
Description: NF0603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0603_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 32668552 - 32668634
Alignment:
| Q |
13 |
aatattgtaaaatatttaacagtatttaatagaatgcattaaatacttttcatttatattataattttcttcatttaactata |
95 |
Q |
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| T |
32668552 |
aatattgtaaaatatttaacagtatttaatagaattcattaaatacttttcatttatataataattttattcatttaactata |
32668634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 32668639 - 32668676
Alignment:
| Q |
111 |
ctttggttaaatattcaatctctagaacttaatagaag |
148 |
Q |
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| T |
32668639 |
ctttggtcaaatagtcaatctctagaacttaatagaag |
32668676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 20752528 - 20752464
Alignment:
| Q |
22 |
aaatatttaacagtatttaatagaatgcattaaatacttttcatttatattataattttcttcatt |
87 |
Q |
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| T |
20752528 |
aaatatttgaaaatatttaatagaatgtattaaatacttttcatttata-tataattttgttcatt |
20752464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 18765546 - 18765620
Alignment:
| Q |
13 |
aatattgtaaaatatttaacagtatttaatagaatgcattaaatacttttcatttatattataattttcttcatt |
87 |
Q |
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| T |
18765546 |
aatattatcaaatatttgacaacatttaatagaatgtattaaatacttttcgtttatactatatttttgttcatt |
18765620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 17951100 - 17951061
Alignment:
| Q |
36 |
atttaatagaatgcattaaatacttttcatttatattata |
75 |
Q |
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| T |
17951100 |
atttaatagaatatattaaatacttttcatttatattata |
17951061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 17954952 - 17954913
Alignment:
| Q |
36 |
atttaatagaatgcattaaatacttttcatttatattata |
75 |
Q |
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| T |
17954952 |
atttaatagaatatattaaatacttttcatttatattata |
17954913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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