View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0603_high_32 (Length: 215)

Name: NF0603_high_32
Description: NF0603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0603_high_32
NF0603_high_32
[»] chr4 (1 HSPs)
chr4 (1-205)||(33151926-33152133)
[»] chr2 (13 HSPs)
chr2 (1-200)||(2362465-2362664)
chr2 (110-200)||(39493636-39493729)
chr2 (1-48)||(39604126-39604173)
chr2 (9-90)||(39421490-39421571)
chr2 (1-48)||(39099397-39099444)
chr2 (8-102)||(39131134-39131228)
chr2 (8-172)||(39396880-39397041)
chr2 (8-48)||(39138463-39138503)
chr2 (110-200)||(39144488-39144581)
chr2 (110-200)||(39604208-39604301)
chr2 (110-164)||(39196746-39196800)
chr2 (110-164)||(39223606-39223660)
chr2 (12-48)||(39152880-39152916)
[»] chr3 (1 HSPs)
chr3 (1-183)||(51575774-51575953)
[»] chr7 (1 HSPs)
chr7 (8-48)||(19808312-19808352)
[»] chr5 (1 HSPs)
chr5 (29-170)||(33562103-33562241)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 33151926 - 33152133
Alignment:
Q  1 atcaaccaagtcctaccattgatggaagaagtttgcagttgctcccaattgagcaaattgatgaacttgagtcacgtggcaatgacattctagctaatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33151926 atcaaccaagtcctaccattgatggaagaagtttgcagttgctcccaattgagcaaattgatgaacttgagtcacgtggcaatgacattctagctaatct 33152025  T
Q  101 gctag---catcatcatcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgtaaaggagacaatgctgcaattattgat 197  Q
    |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33152026 gctagcatcatcatcatcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgtaagggagacaatgctgcaattattgat 33152125  T
Q  198 gatgtcca 205  Q
    ||| ||||    
T  33152126 gatttcca 33152133  T

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Target: chr2 (Bit Score: 144; Significance: 7e-76; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 2362465 - 2362664
Alignment:
Q  1 atcaaccaagtcctaccattgatggaagaagtttgcagttgctcccaattgagcaaattgatgaacttgagtcacgtggcaatgacattctagctaatct 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||| |||| ||||||||||||    
T  2362465 atcaaccaagtcctaccattgatggaagaagtttgcagtttctcccaattgaggaaattgatgaacttgagtcacatggcaacgacagtctagctaatct 2362564  T
Q  101 gctagcatcatcatcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgtaaaggagacaatgctgcaattattgatgat 200  Q
    |||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||  |||||| ||||| |||| || |||||||||||||    
T  2362565 gctagcatcatcatcagatccatcaaaagatgttttagatataatccagaaccccatcattccacagtgtaagggagaaaatgttgtaattattgatgat 2362664  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 110 - 200
Target Start/End: Complemental strand, 39493729 - 39493636
Alignment:
Q  110 atcatcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgtaa---aggagacaatgctgcaattattgatgat 200  Q
    |||||||||||||||||||  |||||||||||| || ||||||||||| |||  |  ||||||   ||||||| ||||||||||||||||||||    
T  39493729 atcatcagatccatcaaaagttgttttggatataatacagaaccccattattaaaaagtgtaagataggagacgatgctgcaattattgatgat 39493636  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 39604126 - 39604173
Alignment:
Q  1 atcaaccaagtcctaccattgatggaagaagtttgcagttgctcccaa 48  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  39604126 atcaatcaactcctaccattgatggaagaagtttgcagttgctcccaa 39604173  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 39421571 - 39421490
Alignment:
Q  9 agtcctaccattgatggaagaagtttgcagttgctcccaattgagcaaattgatgaacttgagtcacgtggcaatgacattc 90  Q
    |||||| |||||| ||||| ||||||||||||||||||| ||||||| | |||||||| |||||| | |||  |||||||||    
T  39421571 agtcctgccattgttggaacaagtttgcagttgctcccatttgagcagactgatgaacctgagtcccctggtgatgacattc 39421490  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 39099397 - 39099444
Alignment:
Q  1 atcaaccaagtcctaccattgatggaagaagtttgcagttgctcccaa 48  Q
    ||||| ||| ||||||||||||||||||||||||| ||||||||||||    
T  39099397 atcaatcaactcctaccattgatggaagaagtttgaagttgctcccaa 39099444  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 39131134 - 39131228
Alignment:
Q  8 aagtcctaccattgatggaagaagtttgcagttgctcccaattgagcaaattgatgaacttgagtcacgtggcaatgacattctagctaatctgc 102  Q
    |||||| |||||||||| ||||||||||  ||||||||||  ||||| || ||||||||||||||    || | |||||||||||| ||||||||    
T  39131134 aagtcccaccattgatgaaagaagtttgatgttgctcccatgtgagctaactgatgaacttgagttgtctgactatgacattctaggtaatctgc 39131228  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 172
Target Start/End: Complemental strand, 39397041 - 39396880
Alignment:
Q  8 aagtcctaccattgatggaagaagtttgcagttgctcccaattgagcaaattgatgaacttgagtcacgtggcaatgacattctagctaatctgctagca 107  Q
    |||||||||||||||||||| |||||||||||||  |   | |||  |||  |||| | ||||||||| | |||||||||||   | | ||||||||| |    
T  39397041 aagtcctaccattgatggaacaagtttgcagttggacatgagtgataaaaccgatggagttgagtcacttcgcaatgacatttatgtttatctgctagaa 39396942  T
Q  108 tcatcatcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgtaa 172  Q
    ||||||   |||||||||| |  |||||||||||| || || |||||||| |||||| |||||||    
T  39396941 tcatca---gatccatcaagacttgttttggatataatacaaaaccccattattccactgtgtaa 39396880  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 39138463 - 39138503
Alignment:
Q  8 aagtcctaccattgatggaagaagtttgcagttgctcccaa 48  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  39138463 aagtccaaccattgatggaacaagtttgcagttgctcccaa 39138503  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 200
Target Start/End: Original strand, 39144488 - 39144581
Alignment:
Q  110 atcatcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgtaa---aggagacaatgctgcaattattgatgat 200  Q
    |||||||||||||||||||  |||||||||||| || |||||||| || |||  |  ||||||   ||||||| |||||| |||||||||||||    
T  39144488 atcatcagatccatcaaaagttgttttggatataatacagaacccgattattaaaaagtgtaagataggagacgatgctgtaattattgatgat 39144581  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 200
Target Start/End: Original strand, 39604208 - 39604301
Alignment:
Q  110 atcatcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgtaa---aggagacaatgctgcaattattgatgat 200  Q
    |||||||||||||||||||  |||||||||||| || ||||| ||||| |||| |  || |||    ||||||||||||| |||||||||||||    
T  39604208 atcatcagatccatcaaaagttgttttggatataatacagaatcccattattcaaaagtataagatgggagacaatgctgtaattattgatgat 39604301  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 39196800 - 39196746
Alignment:
Q  110 atcatcagatccatcaaaatatgttttggatattatccagaaccccatcattcca 164  Q
    |||||||||||||||||||  ||||||||| || || | ||||||||||||||||    
T  39196800 atcatcagatccatcaaaacttgttttggaaatgatactgaaccccatcattcca 39196746  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 39223606 - 39223660
Alignment:
Q  110 atcatcagatccatcaaaatatgttttggatattatccagaaccccatcattcca 164  Q
    |||||||||||||||||||  ||||||||| || || | ||||||||||||||||    
T  39223606 atcatcagatccatcaaaacttgttttggaaatgatactgaaccccatcattcca 39223660  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 39152880 - 39152916
Alignment:
Q  12 cctaccattgatggaagaagtttgcagttgctcccaa 48  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  39152880 cctactattgatggaacaagtttgcagttgctcccaa 39152916  T

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Target: chr3 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 51575774 - 51575953
Alignment:
Q  1 atcaaccaagtcctaccattgatggaagaagtttgcagttgctcccaattgagcaaattgatgaacttgagtcacgtggcaatgacattctagctaatct 100  Q
    |||| |||| |||| |||||||||||||||| |||||||| |||| | |||| || | ||| ||||||||||||| ||| |||||||||||||  |||||    
T  51575774 atcatccaaatcctgccattgatggaagaagcttgcagtttctccgagttgaacagactgacgaacttgagtcacatggaaatgacattctagtcaatct 51575873  T
Q  101 gctagcatcatcatcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgtaaaggagacaatg 183  Q
     ||||   |||| ||||||||||||||| ||||| ||||||| || ||||||| ||||||||||   ||||| ||||||||||    
T  51575874 tctag---catcctcagatccatcaaaagatgttctggatataatacagaaccacatcattccacattgtaagggagacaatg 51575953  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 19808312 - 19808352
Alignment:
Q  8 aagtcctaccattgatggaagaagtttgcagttgctcccaa 48  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  19808312 aagtccaaccattgatggaacaagtttgcagttgctcccaa 19808352  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 170
Target Start/End: Original strand, 33562103 - 33562241
Alignment:
Q  29 aagtttgcagttgctcccaattgagcaaattgatgaacttgagtcacgtggcaatgacattctagctaatctgctagcatcatcatcagatccatcaaaa 128  Q
    |||||||||||||  | ||| |||| ||| ||||| | ||||||||| |  |||||  ||| |||||||||||| || ||||   |||||||||||||||    
T  33562103 aagtttgcagttggacacaagtgagaaaactgatggagttgagtcactttacaatggtattttagctaatctgcaagaatca---tcagatccatcaaaa 33562199  T
Q  129 tatgttttggatattatccagaaccccatcattccattgtgt 170  Q
      ||||||||| || || | |||||||||| ||||| |||||    
T  33562200 cttgttttggaaatgatactgaaccccatctttccactgtgt 33562241  T

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